Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M03
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease precursor 330 2e-90
sp|Q05744|CATD_CHICK Cathepsin D precursor [Contains: Cathe... 315 8e-86
sp|P07339|CATD_HUMAN Cathepsin D precursor [Contains: Cathe... 301 2e-81
sp|Q9DEX3|CATD_CLUHA Cathepsin D precursor 301 2e-81
sp|P18242|CATD_MOUSE Cathepsin D precursor 298 1e-80
sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Catheps... 296 5e-80
sp|P80209|CATD_BOVIN Cathepsin D precursor 295 1e-79
sp|Q9MZS8|CATD_SHEEP Cathepsin D precursor 288 1e-77
sp|P00795|CATD_PIG Cathepsin D [Contains: Cathepsin D light... 286 4e-77
sp|Q805F2|CATEB_XENLA Cathepsin E-B precursor 276 4e-74
>sp|Q03168|ASPP_AEDAE Lysosomal aspartic protease precursor
Length = 387
Score = 330 bits (847), Expect = 2e-90
Identities = 165/268 (61%), Positives = 194/268 (72%), Gaps = 3/268 (1%)
Frame = +3
Query: 39 RVPLKKMESARSNIKKFNMMLSHFTK--NGKVTPFPEPLNNYMDAQYFGDITIGTPPQLF 212
RV L K ESAR + + + + N P PEPL+NY+DAQY+G ITIGTPPQ F
Sbjct: 22 RVQLHKTESARQHFRNVDTEIKQLRLKYNAVSGPVPEPLSNYLDAQYYGAITIGTPPQSF 81
Query: 213 TVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSIRYGTGSLSGFLS 392
V+FDTGSSNLWVPSK+C TNIACL H KY++ KSST+ KNGT F I+YG+GSLSG+LS
Sbjct: 82 KVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTFEKNGTAFHIQYGSGSLSGYLS 141
Query: 393 TDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKL 572
TDTV + G +V QTF EAI+EPG+ FVAAKFDGILG+ Y SISVD V PVF NM Q L
Sbjct: 142 TDTVGLGGVSVTKQTFAEAINEPGLVFVAAKFDGILGLGYSSISVDGVVPVFYNMFNQGL 201
Query: 573 VDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSMLGKT 752
+DAP+FSFYLNRD + GGEI+FGGSD+N Y G FTY V K YWQFKMD + +
Sbjct: 202 IDAPVFSFYLNRDPSAAEGGEIIFGGSDSNKYTGDFTYLSVDRKAYWQFKMDSVKVGDTE 261
Query: 753 YCTE-CIAIADTGTSLIVGPESVIDDIN 833
+C C AIADTGTSLI GP S + IN
Sbjct: 262 FCNNGCEAIADTGTSLIAGPVSEVTAIN 289
>sp|Q05744|CATD_CHICK Cathepsin D precursor [Contains: Cathepsin D light chain; Cathepsin
D heavy chain]
Length = 398
Score = 315 bits (808), Expect = 8e-86
Identities = 165/294 (56%), Positives = 203/294 (69%), Gaps = 17/294 (5%)
Frame = +3
Query: 6 LLLMPLV---VALFRVPLKKMESAR-------SNIKKFNMMLSHFTK-----NGKVTPFP 140
LLL+ LV AL R+PL K S R S I N ++ F K P P
Sbjct: 9 LLLLALVGPCAALIRIPLTKFTSTRRMLTEVGSEIPDMNA-ITQFLKFKLGFADLAEPTP 67
Query: 141 EPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKS 320
E L NYMDAQY+G+I IGTPPQ FTV+FDTGSSNLWVPS C + +IACL H KYD+SKS
Sbjct: 68 EILKNYMDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSVHCHLLDIACLLHHKYDASKS 127
Query: 321 STYVKNGTDFSIRYGTGSLSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGIL 500
STYV+NGT+F+I YGTGSLSGFLS DTVT+ + NQ FGEA+ +PG+TF+AAKFDGIL
Sbjct: 128 STYVENGTEFAIHYGTGSLSGFLSQDTVTLGNLKIKNQIFGEAVKQPGITFIAAKFDGIL 187
Query: 501 GMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPF 680
GMA+P ISVD+VTP F N++ QKL++ IFSFYLNRD +PGGE+L GG+D +Y+G F
Sbjct: 188 GMAFPRISVDKVTPFFDNVMQQKLIEKNIFSFYLNRDPTAQPGGELLLGGTDPKYYSGDF 247
Query: 681 TYTPVTSKTYWQFKMDGLSML-GKTYCT-ECIAIADTGTSLIVGPESVIDDINS 836
++ VT K YWQ MD + + G T C C AI DTGTSLI GP + ++ +
Sbjct: 248 SWVNVTRKAYWQVHMDSVDVANGLTLCKGGCEAIVDTGTSLITGPTKEVKELQT 301
>sp|P07339|CATD_HUMAN Cathepsin D precursor [Contains: Cathepsin D light chain; Cathepsin
D heavy chain]
Length = 412
Score = 301 bits (770), Expect = 2e-81
Identities = 157/299 (52%), Positives = 194/299 (64%), Gaps = 25/299 (8%)
Frame = +3
Query: 9 LLMPLVVALFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------------PFPEPLN 152
LL AL R+PL K S R + + + G V+ P PE L
Sbjct: 13 LLAAPASALVRIPLHKFTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLK 72
Query: 153 NYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYV 332
NYMDAQY+G+I IGTPPQ FTV+FDTGSSNLWVPS CK+ +IAC H KY+S KSSTYV
Sbjct: 73 NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYV 132
Query: 333 KNGTDFSIRYGTGSLSGFLSTDTVTI-----------AGANVVNQTFGEAISEPGMTFVA 479
KNGT F I YG+GSLSG+LS DTV++ G V Q FGEA +PG+TF+A
Sbjct: 133 KNGTSFDIHYGSGSLSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIA 192
Query: 480 AKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDT 659
AKFDGILGMAYP ISV+ V PVF N++ QKLVD IFSFYL+RD + +PGGE++ GG+D+
Sbjct: 193 AKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDS 252
Query: 660 NFYNGPFTYTPVTSKTYWQFKMDGLSML-GKTYCTE-CIAIADTGTSLIVGPESVIDDI 830
+Y G +Y VT K YWQ +D + + G T C E C AI DTGTSL+VGP + ++
Sbjct: 253 KYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVREL 311
>sp|Q9DEX3|CATD_CLUHA Cathepsin D precursor
Length = 396
Score = 301 bits (770), Expect = 2e-81
Identities = 150/277 (54%), Positives = 190/277 (68%), Gaps = 13/277 (4%)
Frame = +3
Query: 30 ALFRVPLKKMESARSNIKKFNMMLSHFTKN-----------GKVTPFPEPLNNYMDAQYF 176
A+ R+PLKK S R + + + P PE L NYMDAQY+
Sbjct: 18 AIVRIPLKKFRSIRRTLSDSGLNVEQLLAGTNSLQHNQGFPSSNAPTPETLKNYMDAQYY 77
Query: 177 GDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSI 356
G+I +GTP Q+FTV+FDTGSSNLW+PS C T+IACL H KY+ +KSSTYVKNGT+F+I
Sbjct: 78 GEIGLGTPVQMFTVVFDTGSSNLWLPSIHCSFTDIACLLHHKYNGAKSSTYVKNGTEFAI 137
Query: 357 RYGTGSLSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYPSISVDQV 536
+YG+GSLSG+LS D+ TI V Q FGEAI +PG+ F+AAKFDGILGMAYP ISVD V
Sbjct: 138 QYGSGSLSGYLSQDSCTIGDIVVEKQLFGEAIKQPGVAFIAAKFDGILGMAYPRISVDGV 197
Query: 537 TPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPVTSKTYWQ 716
PVF M++QK V+ +FSFYLNR+ + +PGGE+L GG+D +Y G F Y PVT + YWQ
Sbjct: 198 PPVFDMMMSQKKVEQNVFSFYLNRNPDTEPGGELLLGGTDPKYYTGDFNYVPVTRQAYWQ 257
Query: 717 FKMDGLSMLGK-TYCTE-CIAIADTGTSLIVGPESVI 821
MDG+S+ + T C + C AI DTGTSLI GP + +
Sbjct: 258 IHMDGMSIGSQLTLCKDGCEAIVDTGTSLITGPPAEV 294
>sp|P18242|CATD_MOUSE Cathepsin D precursor
Length = 410
Score = 298 bits (764), Expect = 1e-80
Identities = 157/297 (52%), Positives = 192/297 (64%), Gaps = 23/297 (7%)
Frame = +3
Query: 9 LLMPLVVALFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------------PFPEPLN 152
LL A+ R+PL+K S R + + + G +T P E L
Sbjct: 13 LLASSSFAIIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEPVSELLK 72
Query: 153 NYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYV 332
NY+DAQY+GDI IGTPPQ FTV+FDTGSSNLWVPS CKI +IAC H KY+S KSSTYV
Sbjct: 73 NYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYV 132
Query: 333 KNGTDFSIRYGTGSLSGFLSTDTVTI---------AGANVVNQTFGEAISEPGMTFVAAK 485
KNGT F I YG+GSLSG+LS DTV++ G V Q FGEA +PG+ FVAAK
Sbjct: 133 KNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAK 192
Query: 486 FDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNF 665
FDGILGM YP ISV+ V PVF N++ QKLVD IFSFYLNRD G+PGGE++ GG+D+ +
Sbjct: 193 FDGILGMGYPHISVNNVLPVFDNLMQQKLVDKNIFSFYLNRDPEGQPGGELMLGGTDSKY 252
Query: 666 YNGPFTYTPVTSKTYWQFKMDGLSMLGK-TYCT-ECIAIADTGTSLIVGPESVIDDI 830
Y+G +Y VT K YWQ MD L + + T C C AI DTGTSL+VGP + ++
Sbjct: 253 YHGELSYLNVTRKAYWQVHMDQLEVGNELTLCKGGCEAIVDTGTSLLVGPVEEVKEL 309
>sp|P24268|CATD_RAT Cathepsin D precursor [Contains: Cathepsin D 12 kDa light chain;
Cathepsin D 9 kDa light chain; Cathepsin D 34 kDa heavy
chain; Cathepsin D 30 kDa heavy chain]
Length = 407
Score = 296 bits (758), Expect = 5e-80
Identities = 152/287 (52%), Positives = 191/287 (66%), Gaps = 20/287 (6%)
Frame = +3
Query: 30 ALFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------------PFPEPLNNYMDAQY 173
AL R+PL+K S R + + + G +T P E L NY+DAQY
Sbjct: 20 ALIRIPLRKFTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPRTKEPVSELLKNYLDAQY 79
Query: 174 FGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFS 353
+G+I IGTPPQ FTV+FDTGSSNLWVPS CK+ +IAC H KY+S KSSTYVKNGT F
Sbjct: 80 YGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWVHHKYNSDKSSTYVKNGTSFD 139
Query: 354 IRYGTGSLSGFLSTDTVTI------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMAYP 515
I YG+GSLSG+LS DTV++ G V Q FGEA +PG+ F+AAKFDGILGM YP
Sbjct: 140 IHYGSGSLSGYLSQDTVSVPCKSDLGGIKVEKQIFGEATKQPGVVFIAAKFDGILGMGYP 199
Query: 516 SISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYTPV 695
ISV++V PVF N++ QKLV+ IFSFYLNRD G+PGGE++ GG+D+ +Y+G +Y V
Sbjct: 200 FISVNKVLPVFDNLMKQKLVEKNIFSFYLNRDPTGQPGGELMLGGTDSRYYHGELSYLNV 259
Query: 696 TSKTYWQFKMDGLSMLGK-TYCT-ECIAIADTGTSLIVGPESVIDDI 830
T K YWQ MD L + + T C C AI DTGTSL+VGP + ++
Sbjct: 260 TRKAYWQVHMDQLEVGSELTLCKGGCEAIVDTGTSLLVGPVDEVKEL 306
>sp|P80209|CATD_BOVIN Cathepsin D precursor
Length = 390
Score = 295 bits (755), Expect = 1e-79
Identities = 152/289 (52%), Positives = 190/289 (65%), Gaps = 23/289 (7%)
Frame = +3
Query: 33 LFRVPLKKMESARSNIKKFNMMLSHFTKNGKVT------------PFPEPLNNYMDAQYF 176
+ R+PL K S R + + + G ++ P PE L NYMDAQY+
Sbjct: 1 VIRIPLHKFTSIRRTMSEAAGXVXXLIAKGPISKYATGEPAVRQGPIPELLKNYMDAQYY 60
Query: 177 GDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTYVKNGTDFSI 356
G+I IGTPPQ FTV+FDTGS+NLWVPS CK+ +IAC THRKY+S KSSTYVKNGT F I
Sbjct: 61 GEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWTHRKYNSDKSSTYVKNGTTFDI 120
Query: 357 RYGTGSLSGFLSTDTVTI---------AGANVVNQTFGEAISEPGMTFVAAKFDGILGMA 509
YG+GSLSG+LS DTV++ G V QTFGEAI +PG+ F+AAKFDGILGMA
Sbjct: 121 HYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPGVVFIAAKFDGILGMA 180
Query: 510 YPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYT 689
YP ISV+ V PVF N++ QKLVD +FSF+LNRD +PGGE++ GG+D+ +Y G +
Sbjct: 181 YPRISVNNVLPVFDNLMQQKLVDKNVFSFFLNRDPKAQPGGELMLGGTDSKYYRGSLMFH 240
Query: 690 PVTSKTYWQFKMDGLSM-LGKTYCT-ECIAIADTGTSLIVGPESVIDDI 830
VT + YWQ MD L + T C C AI DTGTSLIVGP + ++
Sbjct: 241 NVTRQAYWQIHMDQLDVGSSLTVCKGGCEAIVDTGTSLIVGPVEEVREL 289
>sp|Q9MZS8|CATD_SHEEP Cathepsin D precursor
Length = 365
Score = 288 bits (738), Expect = 1e-77
Identities = 143/245 (58%), Positives = 175/245 (71%), Gaps = 11/245 (4%)
Frame = +3
Query: 132 PFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDS 311
P PE L NYMDAQY+G+I IGTPPQ FTV+FDTGS+NLWVPS CK+ +IAC H KY+S
Sbjct: 41 PIPELLTNYMDAQYYGEIGIGTPPQCFTVVFDTGSANLWVPSIHCKLLDIACWVHHKYNS 100
Query: 312 SKSSTYVKNGTDFSIRYGTGSLSGFLSTDTVTI---------AGANVVNQTFGEAISEPG 464
KSSTYVKNGT F I YG+GSLSG+LS DTV++ G V QTFGEAI +PG
Sbjct: 101 DKSSTYVKNGTTFDIHYGSGSLSGYLSQDTVSVPCNPSSSSPGGVTVQRQTFGEAIKQPG 160
Query: 465 MTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILF 644
+ F+AAKFDGILGMAYP ISV+ V PVF N++ QKLVD +FSF+LNRD +PG E++
Sbjct: 161 VVFIAAKFDGILGMAYPRISVNNVLPVFDNLMRQKLVDKNVFSFFLNRDPKAQPGEELML 220
Query: 645 GGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSM-LGKTYCT-ECIAIADTGTSLIVGPESV 818
GG+D+ +Y G TY VT + YWQ MD L + T C C AI DTGTSL+VGP
Sbjct: 221 GGTDSKYYRGSLTYHNVTRQAYWQIHMDQLDVGSSLTVCKGGCEAIVDTGTSLMVGPVDE 280
Query: 819 IDDIN 833
+ +++
Sbjct: 281 VRELH 285
>sp|P00795|CATD_PIG Cathepsin D [Contains: Cathepsin D light chain; Cathepsin D heavy
chain]
Length = 345
Score = 286 bits (733), Expect = 4e-77
Identities = 148/242 (61%), Positives = 175/242 (72%), Gaps = 13/242 (5%)
Frame = +3
Query: 132 PFPEPLNNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDS 311
P PE L NYMDAQY+G+I IGTPPQ FTV+FDTGSSNLWVPS CK+ +IAC H KY+S
Sbjct: 2 PIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNS 61
Query: 312 SKSSTYVKNGTDFSIRYGTGSLSGFLST-DTVTI---------AGANVVNQTFGEAISEP 461
KSSTYVKNGT F+I YG+GSLSG+LS+ DTV++ G V QTFGEA +P
Sbjct: 62 GKSSTYVKNGTTFAIHYGSGSLSGYLSSQDTVSVPCNSALSGVGGIKVERQTFGEATKQP 121
Query: 462 GMTFVAAKFDGILGMAYPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEIL 641
G+TF+AAKFDGILGMAYP ISV+ V PVF N++ QKLVD IFSFYLNRD +PGGE++
Sbjct: 122 GLTFIAAKFDGILGMAYPRISVNNVVPVFDNLMQQKLVDKDIFSFYLNRDPGAQPGGELM 181
Query: 642 FGGSDTNFYNGPFTYTPVTSKTYWQFKMDGLSMLGK-TYCTE-CIAIADTGTSLIVG-PE 812
GG D+ +Y G Y VT K YWQ M+ +++ T C C AI DTGTSLIVG PE
Sbjct: 182 LGGIDSKYYKGSLDYHNVTRKAYWQIHMNQVAVGSSLTLCKGGCEAIVDTGTSLIVGQPE 241
Query: 813 SV 818
V
Sbjct: 242 EV 243
>sp|Q805F2|CATEB_XENLA Cathepsin E-B precursor
Length = 397
Score = 276 bits (707), Expect = 4e-74
Identities = 145/291 (49%), Positives = 190/291 (65%), Gaps = 14/291 (4%)
Frame = +3
Query: 6 LLLMPLVVALFRVPLKKMESARSNIKKFNMMLSHFTKNG------------KVTPFPEPL 149
LL + LV L RVPLK+ +S R K+ + +T+ G P EPL
Sbjct: 8 LLFVTLVYGLIRVPLKRQKSIRKTPKEKGKLSHVWTQQGIDMVQYTDSCNNDQAP-SEPL 66
Query: 150 NNYMDAQYFGDITIGTPPQLFTVLFDTGSSNLWVPSKKCKITNIACLTHRKYDSSKSSTY 329
NYMD QYFG+I+IGTPPQ FTV+FDTGSSNLWVPS C + AC H ++ SSTY
Sbjct: 67 INYMDVQYFGEISIGTPPQNFTVIFDTGSSNLWVPSVYC--ISPACAQHNRFQPQLSSTY 124
Query: 330 VKNGTDFSIRYGTGSLSGFLSTDTVTIAGANVVNQTFGEAISEPGMTFVAAKFDGILGMA 509
NG +FS++YGTGSLSG + D+VT+ G V NQ FGE++SEPG TFV A FDGILG+
Sbjct: 125 ESNGNNFSLQYGTGSLSGVIGIDSVTVEGILVQNQQFGESVSEPGSTFVDASFDGILGLG 184
Query: 510 YPSISVDQVTPVFQNMVTQKLVDAPIFSFYLNRDVNGKPGGEILFGGSDTNFYNGPFTYT 689
YPSI+V TPVF NM+ Q LV+ P+FS Y++RD N GGE++FGG D + ++G +
Sbjct: 185 YPSIAVGGCTPVFDNMIAQNLVELPMFSVYMSRDPNSPVGGELVFGGFDASRFSGQLNWV 244
Query: 690 PVTSKTYWQFKMDGLSMLGK-TYCT-ECIAIADTGTSLIVGPESVIDDINS 836
PVT++ YWQ ++D + + G+ +C+ C AI DTGTS+I GP S I + S
Sbjct: 245 PVTNQGYWQIQLDNIQINGEVVFCSGGCQAIVDTGTSMITGPSSDIVQLQS 295
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,489,208
Number of Sequences: 369166
Number of extensions: 2212899
Number of successful extensions: 6285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5969
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)