Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_L24
(161 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WQI3|RS29_SPOFR 40S ribosomal protein S29 77 1e-14
sp|Q9VH69|RS29_DROME 40S ribosomal protein S29 76 3e-14
sp|Q90YP2|RS29_ICTPU 40S ribosomal protein S29 >gi|73917999... 75 5e-14
sp|Q9NB51|RS29_CULQU 40S ribosomal protein S29 75 5e-14
sp|P62275|RS29_RAT 40S ribosomal protein S29 >gi|54039459|s... 75 6e-14
sp|P41057|RS29A_YEAST 40S ribosomal protein S29-A (S36) (YS29) 72 4e-13
sp|Q9C2P2|RS29_NEUCR 40S ribosomal protein S29 70 1e-12
sp|Q7XYB0|RS29_GRIJA 40S ribosomal protein S29 69 4e-12
sp|P41058|RS29B_YEAST 40S ribosomal protein S29-B (S36) (YS29) 67 1e-11
sp|P54110|RS14_METJA 30S ribosomal protein S14P 58 6e-09
>sp|Q8WQI3|RS29_SPOFR 40S ribosomal protein S29
Length = 56
Score = 77.0 bits (188), Expect = 1e-14
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ YGQGSR CR CSN HGLIRKYGLN+CR+CFRE A IGFKK
Sbjct: 12 RRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54
>sp|Q9VH69|RS29_DROME 40S ribosomal protein S29
Length = 56
Score = 75.9 bits (185), Expect = 3e-14
Identities = 33/43 (76%), Positives = 36/43 (83%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ YGQGSR CR CSN HGLIRKYGLN+CR+CFRE A IGFKK
Sbjct: 12 RKYGQGSRCCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54
>sp|Q90YP2|RS29_ICTPU 40S ribosomal protein S29
sp|Q6UZG0|RS29_HIPCM 40S ribosomal protein S29
Length = 56
Score = 75.1 bits (183), Expect = 5e-14
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ +GQGSR CRVCSN HGLIRKYGLNMCR+CFR+ A+ IGF K
Sbjct: 12 RKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54
>sp|Q9NB51|RS29_CULQU 40S ribosomal protein S29
Length = 56
Score = 75.1 bits (183), Expect = 5e-14
Identities = 31/43 (72%), Positives = 38/43 (88%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ YGQGSR CR CSN+HG+IRKYGLN+CR+CFRE A+ IGF+K
Sbjct: 12 RKYGQGSRFCRACSNNHGMIRKYGLNICRQCFREYAKDIGFRK 54
>sp|P62275|RS29_RAT 40S ribosomal protein S29
sp|P62274|RS29_MOUSE 40S ribosomal protein S29
sp|P62276|RS29_BOVIN 40S ribosomal protein S29
sp|P62273|RS29_HUMAN 40S ribosomal protein S29
Length = 56
Score = 74.7 bits (182), Expect = 6e-14
Identities = 32/43 (74%), Positives = 37/43 (86%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ +GQGSR CRVCSN HGLIRKYGLNMCR+CFR+ A+ IGF K
Sbjct: 12 RKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
>sp|P41057|RS29A_YEAST 40S ribosomal protein S29-A (S36) (YS29)
Length = 56
Score = 72.0 bits (175), Expect = 4e-13
Identities = 31/43 (72%), Positives = 36/43 (83%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ YG+GSRQCRVCS+ GLIRKYGLN+CR+CFRE A IGF K
Sbjct: 12 RRYGKGSRQCRVCSSHTGLIRKYGLNICRQCFREKANDIGFNK 54
>sp|Q9C2P2|RS29_NEUCR 40S ribosomal protein S29
Length = 56
Score = 70.5 bits (171), Expect = 1e-12
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ YG+GSR CRVC++S GLIRKYGLN+CR+CFRE A IGF K
Sbjct: 12 RTYGKGSRSCRVCTHSAGLIRKYGLNICRQCFREKANDIGFTK 54
>sp|Q7XYB0|RS29_GRIJA 40S ribosomal protein S29
Length = 56
Score = 68.6 bits (166), Expect = 4e-12
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ YG+GSR C++C N HGLIRKY +N+CR+CFRE A+ IGF K
Sbjct: 12 RKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIK 54
>sp|P41058|RS29B_YEAST 40S ribosomal protein S29-B (S36) (YS29)
Length = 56
Score = 67.0 bits (162), Expect = 1e-11
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSNSHGLIRKYGLNMCRRCFRENAEIIGFKK 130
+ +G+GSRQCRVCS+ GL+RKY LN+CR+CFRE A IGF K
Sbjct: 12 RRFGKGSRQCRVCSSHTGLVRKYDLNICRQCFREKANDIGFHK 54
>sp|P54110|RS14_METJA 30S ribosomal protein S14P
Length = 53
Score = 58.2 bits (139), Expect = 6e-09
Identities = 27/44 (61%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = +2
Query: 2 KNYGQGSRQCRVCSN-SHGLIRKYGLNMCRRCFRENAEIIGFKK 130
K YG G R C+ C + GLIRKYGLN+CR+CFRE A +GFKK
Sbjct: 8 KKYGYGIRPCQRCGHVGPGLIRKYGLNLCRQCFREIAHKLGFKK 51
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,032,257
Number of Sequences: 369166
Number of extensions: 222624
Number of successful extensions: 627
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 68,354,980
effective HSP length: 26
effective length of database: 63,551,870
effective search space used: 1715900490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)