Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_L14
(671 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like ... 30 5.7
sp|Q6P1G2|FXL10_MOUSE F-box/LRR-repeat protein 10 (F-box an... 29 9.7
>sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin protein ligase TOM1-like protein
Length = 4065
Score = 30.0 bits (66), Expect = 5.7
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 64 KIYRVNKKACRCYASIRTRYRQTRCLIRPRNIIRRAAHVYHNGIYDSITTIFYRRHNCAC 243
K+ + K S+ ++Y+QTR P + R HV+H DS +++Y++ +
Sbjct: 3679 KVLEFDNKRNYFNRSVHSKYQQTRHSFPPLQLQVRREHVFH----DSFRSLYYKKADELK 3734
Query: 244 LRRTSTRF 267
+ + RF
Sbjct: 3735 FGKLNIRF 3742
>sp|Q6P1G2|FXL10_MOUSE F-box/LRR-repeat protein 10 (F-box and leucine-rich repeat protein
10) (F-box protein FBL10)
Length = 1309
Score = 29.3 bits (64), Expect = 9.7
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 12/51 (23%)
Frame = +1
Query: 169 AAHVYHNGIYDSITTIFYRRHNCACLR------------RTSTRFVLNRCR 285
AAHV H ++ ++ + R C C+R R TR LNRC+
Sbjct: 1034 AAHVMHREVWMAVFSYLSHRDLCVCMRVCRTWNRWCCDKRLWTRIDLNRCK 1084
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,166,344
Number of Sequences: 369166
Number of extensions: 561907
Number of successful extensions: 2065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2064
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)