Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_L12
(756 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JY0|ECHB_MOUSE Trifunctional enzyme beta subunit, mit... 290 2e-78
sp|O46629|ECHB_BOVIN Trifunctional enzyme beta subunit, mit... 290 3e-78
sp|Q8HXX4|ECHB_MACFA Trifunctional enzyme beta subunit, mit... 287 2e-77
sp|Q60587|ECHB_RAT Trifunctional enzyme beta subunit, mitoc... 286 3e-77
sp|Q5R1W7|ECHB_PANTR Trifunctional enzyme beta subunit, mit... 286 4e-77
sp|P34255|YKA3_CAEEL Hypothetical protein B0303.3 in chromo... 236 5e-62
sp|P76503|FADI_ECOLI 3-ketoacyl-CoA thiolase (Fatty acid ox... 140 5e-33
sp|P44873|ATOB_HAEIN Acetyl-CoA acetyltransferase (Acetoace... 89 1e-17
sp|Q8QZT1|THIL_MOUSE Acetyl-CoA acetyltransferase, mitochon... 85 2e-16
sp|P45369|THIL_CHRVI Acetyl-CoA acetyltransferase (Acetoace... 82 2e-15
>sp|Q99JY0|ECHB_MOUSE Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 290 bits (743), Expect = 2e-78
Identities = 152/228 (66%), Positives = 178/228 (78%), Gaps = 4/228 (1%)
Frame = +2
Query: 8 KPLKSPGGKNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVIL 187
K L P KN+V+++GVRIPFL+SGT YK++MPHDLARAAL GL + N PK VD +I
Sbjct: 45 KTLAKPNMKNIVVVEGVRIPFLLSGTSYKDLMPHDLARAALSGLLHRTNIPKDVVDYIIF 104
Query: 188 GTVIQEVKTSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAG 367
GTVIQEVKTSN+AREAALGAGFS+ TPAHTVTMACISSN A+T ++GL+A G DV +AG
Sbjct: 105 GTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAG 164
Query: 368 GVEFLSDAPIRFSRKVRSTMLDFRKAKTFGQKASLFSR----LLSPETFSVDLPAVAEFS 535
GVE +SD PIR SR +R MLD KAKT GQ+ SL S+ LSPE LPAVAEFS
Sbjct: 165 GVELMSDVPIRHSRNMRKMMLDLNKAKTLGQRLSLLSKFRLNFLSPE-----LPAVAEFS 219
Query: 536 TSETMGHSADRLAAAFGISREEQDLYAMRSHTLAKEAAENGLLDDIVP 679
T+ETMGHSADRLAAAF +SR EQD YA+RSH+LAK+A + G L DIVP
Sbjct: 220 TNETMGHSADRLAAAFAVSRMEQDEYALRSHSLAKKAQDEGHLSDIVP 267
Score = 38.5 bits (88), Expect = 0.020
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 678 PIKIPGIETPITKDNGIRPSSKEKMA 755
P K+PG +T +TKDNGIRPSS E+MA
Sbjct: 267 PFKVPGKDT-VTKDNGIRPSSLEQMA 291
>sp|O46629|ECHB_BOVIN Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 290 bits (742), Expect = 3e-78
Identities = 151/228 (66%), Positives = 179/228 (78%), Gaps = 4/228 (1%)
Frame = +2
Query: 8 KPLKSPGGKNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVIL 187
K L P +N+V++DGVR PFL+SGT YK++MPHDLARAAL GL + + PK VD +I
Sbjct: 45 KTLAKPNIRNIVVVDGVRTPFLLSGTSYKDLMPHDLARAALSGLLHRTSVPKDVVDYIIF 104
Query: 188 GTVIQEVKTSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAG 367
GTVIQEVKTSN+AREAALGAGFS+ TPAHTVTMACISSN A+T ++GL+A G DV +AG
Sbjct: 105 GTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAG 164
Query: 368 GVEFLSDAPIRFSRKVRSTMLDFRKAKTFGQKASLFSR----LLSPETFSVDLPAVAEFS 535
GVE +SD PIR SRK+R MLD KAKT Q+ S+ S+ LSPE LPAV+EFS
Sbjct: 165 GVELMSDIPIRHSRKMRKMMLDLNKAKTLAQRLSIISKFRLNFLSPE-----LPAVSEFS 219
Query: 536 TSETMGHSADRLAAAFGISREEQDLYAMRSHTLAKEAAENGLLDDIVP 679
TSETMGHSADRLAAAF ISREEQD YA+RSH+LAK+A + GLL D+VP
Sbjct: 220 TSETMGHSADRLAAAFAISREEQDEYALRSHSLAKKAQDEGLLSDVVP 267
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 678 PIKIPGIETPITKDNGIRPSSKEKMA 755
P K+PG +T +T+DNGIRPSS ++MA
Sbjct: 267 PFKVPGRDT-VTQDNGIRPSSLDQMA 291
>sp|Q8HXX4|ECHB_MACFA Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 287 bits (734), Expect = 2e-77
Identities = 149/228 (65%), Positives = 179/228 (78%), Gaps = 4/228 (1%)
Frame = +2
Query: 8 KPLKSPGGKNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVIL 187
K L P +N+V++DGVR PFL+SGT YK++MPHDLARAAL GL + + PK+ VD +I
Sbjct: 45 KTLAKPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIF 104
Query: 188 GTVIQEVKTSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAG 367
GTVIQEVKTSN+AREAALGAGFS+ TPAHTVTMACIS+N A+T +GL+A G DV +AG
Sbjct: 105 GTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAG 164
Query: 368 GVEFLSDAPIRFSRKVRSTMLDFRKAKTFGQKASLFSR----LLSPETFSVDLPAVAEFS 535
GVE +SD PIR SRK+R MLD KAK+ GQ+ SL S+ L+PE LPAVAEFS
Sbjct: 165 GVELMSDIPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRLNFLAPE-----LPAVAEFS 219
Query: 536 TSETMGHSADRLAAAFGISREEQDLYAMRSHTLAKEAAENGLLDDIVP 679
TSETMGHSADRLAAAF +SR EQD YA+RSH+LAK+A + GLL D+VP
Sbjct: 220 TSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLSDVVP 267
Score = 37.4 bits (85), Expect = 0.044
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 678 PIKIPGIETPITKDNGIRPSSKEKMA 755
P ++PG +T +TKDNGIRPSS E+MA
Sbjct: 267 PFRVPGKDT-VTKDNGIRPSSLEQMA 291
>sp|Q60587|ECHB_RAT Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 286 bits (733), Expect = 3e-77
Identities = 150/228 (65%), Positives = 177/228 (77%), Gaps = 4/228 (1%)
Frame = +2
Query: 8 KPLKSPGGKNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVIL 187
K L P KN+V+++GVRIPFL+SGT YK++MPHDLARAAL GL + N PK VD +I
Sbjct: 45 KTLAKPNLKNIVVVEGVRIPFLLSGTSYKDLMPHDLARAALSGLLYRTNIPKDVVDYIIF 104
Query: 188 GTVIQEVKTSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAG 367
GTVIQEVKTSN+AREAALGAGFS+ TPAHTVTMACISSN A+T ++GL+A G DV +AG
Sbjct: 105 GTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISSNQAMTTAVGLIASGQCDVVVAG 164
Query: 368 GVEFLSDAPIRFSRKVRSTMLDFRKAKTFGQKASLFSR----LLSPETFSVDLPAVAEFS 535
GVE +SD PIR SR +R MLD KAKT Q+ SL ++ LSPE LPAVAEFS
Sbjct: 165 GVELMSDVPIRHSRNMRKMMLDLNKAKTLAQRLSLLTKFRLNFLSPE-----LPAVAEFS 219
Query: 536 TSETMGHSADRLAAAFGISREEQDLYAMRSHTLAKEAAENGLLDDIVP 679
T+ETMGHSADRLAAAF +SR EQD YA+RSH+LAK+A + G L DIVP
Sbjct: 220 TNETMGHSADRLAAAFAVSRMEQDKYALRSHSLAKKAQDEGHLSDIVP 267
Score = 37.0 bits (84), Expect = 0.057
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 678 PIKIPGIETPITKDNGIRPSSKEKMA 755
P K+PG +T ++KDNGIRPSS E+MA
Sbjct: 267 PFKVPGKDT-VSKDNGIRPSSLEQMA 291
>sp|Q5R1W7|ECHB_PANTR Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
sp|P55084|ECHB_HUMAN Trifunctional enzyme beta subunit, mitochondrial precursor
(TP-beta) [Includes: 3-ketoacyl-CoA thiolase (Acetyl-CoA
acyltransferase) (Beta-ketothiolase)]
Length = 475
Score = 286 bits (732), Expect = 4e-77
Identities = 148/228 (64%), Positives = 179/228 (78%), Gaps = 4/228 (1%)
Frame = +2
Query: 8 KPLKSPGGKNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVIL 187
K L P +N+V++DGVR PFL+SGT YK++MPHDLARAAL GL + + PK+ VD +I
Sbjct: 45 KTLAKPNIRNVVVVDGVRTPFLLSGTSYKDLMPHDLARAALTGLLHRTSVPKEVVDYIIF 104
Query: 188 GTVIQEVKTSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAG 367
GTVIQEVKTSN+AREAALGAGFS+ TPAHTVTMACIS+N A+T +GL+A G DV +AG
Sbjct: 105 GTVIQEVKTSNVAREAALGAGFSDKTPAHTVTMACISANQAMTTGVGLIASGQCDVIVAG 164
Query: 368 GVEFLSDAPIRFSRKVRSTMLDFRKAKTFGQKASLFSR----LLSPETFSVDLPAVAEFS 535
GVE +SD PIR SRK+R MLD KAK+ GQ+ SL S+ L+PE LPAV+EFS
Sbjct: 165 GVELMSDVPIRHSRKMRKLMLDLNKAKSMGQRLSLISKFRFNFLAPE-----LPAVSEFS 219
Query: 536 TSETMGHSADRLAAAFGISREEQDLYAMRSHTLAKEAAENGLLDDIVP 679
TSETMGHSADRLAAAF +SR EQD YA+RSH+LAK+A + GLL D+VP
Sbjct: 220 TSETMGHSADRLAAAFAVSRLEQDEYALRSHSLAKKAQDEGLLSDVVP 267
Score = 38.5 bits (88), Expect = 0.020
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 678 PIKIPGIETPITKDNGIRPSSKEKMA 755
P K+PG +T +TKDNGIRPSS E+MA
Sbjct: 267 PFKVPGKDT-VTKDNGIRPSSLEQMA 291
>sp|P34255|YKA3_CAEEL Hypothetical protein B0303.3 in chromosome III
Length = 448
Score = 236 bits (602), Expect = 5e-62
Identities = 127/219 (57%), Positives = 154/219 (70%), Gaps = 4/219 (1%)
Frame = +2
Query: 35 NLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVILGTVIQEVKT 214
N+VL+D VR PF+VSGT +K++M DL + A+ L +K P + +D++I GTVIQE KT
Sbjct: 25 NIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGTVIQECKT 84
Query: 215 SNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAGGVEFLSDAP 394
SNIAREAAL AG + PAHTVT+ACISSN+A+T MG+LA G + IAGGVE LSD P
Sbjct: 85 SNIAREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAIIAGGVELLSDVP 144
Query: 395 IRFSRKVRSTMLDFRKAKTFGQK----ASLFSRLLSPETFSVDLPAVAEFSTSETMGHSA 562
IR++R R ML KAK K + LLSPE LPAVAEFST ETMGHS
Sbjct: 145 IRYNRNARKAMLGMNKAKDVPSKLKIGGQIVKNLLSPE-----LPAVAEFSTGETMGHSG 199
Query: 563 DRLAAAFGISREEQDLYAMRSHTLAKEAAENGLLDDIVP 679
DRLAAAF +SR EQD +A+RSHTLA EAA+NG D+VP
Sbjct: 200 DRLAAAFNVSRREQDEFAIRSHTLASEAAKNGKFTDVVP 238
>sp|P76503|FADI_ECOLI 3-ketoacyl-CoA thiolase (Fatty acid oxidation complex beta subunit)
(Beta-ketothiolase) (Acetyl-CoA acyltransferase)
(Acyl-CoA ligase) (ACSs)
Length = 436
Score = 140 bits (352), Expect = 5e-33
Identities = 80/222 (36%), Positives = 122/222 (54%)
Frame = +2
Query: 11 PLKSPGGKNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVILG 190
PL + G + ++ G+R PF T + + DL + + L + P + ++ ++ G
Sbjct: 6 PLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMVVGELLARSEIPAEVIEQLVFG 65
Query: 191 TVIQEVKTSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAGG 370
V+Q + NIARE LG G + T A++V+ AC +S A+ N L G I IAGG
Sbjct: 66 QVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESLMAGTIRAGIAGG 125
Query: 371 VEFLSDAPIRFSRKVRSTMLDFRKAKTFGQKASLFSRLLSPETFSVDLPAVAEFSTSETM 550
+ S PI S+K+ ++D KA+T Q+ LFSRL + V PAVAE+ST M
Sbjct: 126 ADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLFSRLRLRDLMPVP-PAVAEYSTGLRM 184
Query: 551 GHSADRLAAAFGISREEQDLYAMRSHTLAKEAAENGLLDDIV 676
G +A+++A +GI+RE+QD A RSH A +A +G L + V
Sbjct: 185 GDTAEQMAKTYGITREQQDALAHRSHQRAAQAWSDGKLKEEV 226
>sp|P44873|ATOB_HAEIN Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase)
Length = 393
Score = 89.0 bits (219), Expect = 1e-17
Identities = 68/217 (31%), Positives = 100/217 (46%), Gaps = 1/217 (0%)
Frame = +2
Query: 32 KNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVILGTVIQEVK 211
+N+V++ VR P +V DL + K+ N V+ VI+G V+Q
Sbjct: 2 ENVVIVSAVRTPIGSFNGALSSVSAVDLGAIVIQEAIKRANIESALVNEVIMGNVLQAGL 61
Query: 212 TSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAGGVEFLSDA 391
N AR+AAL AG + P+ T+ C S ++ + G D+ + GG+E +S A
Sbjct: 62 GQNPARQAALKAGIEKEIPSLTINKVCGSGLKSVALGAQSIISGDADIVVVGGMENMSQA 121
Query: 392 PIRFSRKVRSTMLDFRKAKTFGQKASLFSRLLSPETFSVDLPAVAEFSTSETMGHSADRL 571
P KVR G K L +T D A S MG +A+ +
Sbjct: 122 PYLLDSKVRQ-----------GVK---MGNLTLRDTMIEDGLTCA--SNHYHMGITAENI 165
Query: 572 AAAFGISREEQDLYAMRSHTLAKEAAENGLLD-DIVP 679
A +GISR+ QD A+RS TLA +A + G+ D +IVP
Sbjct: 166 AEQYGISRQAQDELALRSQTLASQAVQLGVFDKEIVP 202
>sp|Q8QZT1|THIL_MOUSE Acetyl-CoA acetyltransferase, mitochondrial precursor
(Acetoacetyl-CoA thiolase)
Length = 424
Score = 84.7 bits (208), Expect = 2e-16
Identities = 65/212 (30%), Positives = 94/212 (44%)
Frame = +2
Query: 23 PGGKNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVILGTVIQ 202
P +V++ +R P + L AA+ G +K PK+ V V +G VIQ
Sbjct: 34 PTLNEVVIVSAIRTPIGSFLGSLASQPATKLGTAAIQGAIEKAGIPKEEVKEVYMGNVIQ 93
Query: 203 EVKTSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAGGVEFL 382
+ R+A LGAG STP TV C S AI + L CG DV +AGG+E +
Sbjct: 94 GGEGQAPTRQATLGAGLPISTPCTTVNKVCASGMKAIMMASQSLMCGHQDVMVAGGMESM 153
Query: 383 SDAPIRFSRKVRSTMLDFRKAKTFGQKASLFSRLLSPETFSVDLPAVAEFSTSETMGHSA 562
S+ P SR A+ + + + D + + MG+ A
Sbjct: 154 SNVPYVMSR-----------------GATPYGGVKLEDLIVKD--GLTDVYNKIHMGNCA 194
Query: 563 DRLAAAFGISREEQDLYAMRSHTLAKEAAENG 658
+ A ISR+EQD YA+ S+T +KEA + G
Sbjct: 195 ENTAKKMNISRQEQDTYALSSYTRSKEAWDAG 226
>sp|P45369|THIL_CHRVI Acetyl-CoA acetyltransferase (Acetoacetyl-CoA thiolase)
Length = 394
Score = 81.6 bits (200), Expect = 2e-15
Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 1/217 (0%)
Frame = +2
Query: 32 KNLVLIDGVRIPFLVSGTDYKNVMPHDLARAALLGLHKKLNFPKQCVDNVILGTVIQEVK 211
+N+V++D R G ++ ++ A L GL + + +D VILG V+
Sbjct: 3 ENIVIVDAGRSAIGTFGGSLSSLSATEIGTAVLKGLLARTGLAPEQIDEVILGQVLTAGV 62
Query: 212 TSNIAREAALGAGFSESTPAHTVTMACISSNIAITNSMGLLACGAIDVAIAGGVEFLSDA 391
N AR+ L AG S PA T+ C S A+ +M +ACG D+ IAGG E +S
Sbjct: 63 GQNPARQTTLHAGLPHSVPAMTINKVCGSGLKAVHLAMQAIACGDADIVIAGGQESMSQ- 121
Query: 392 PIRFSRKVRSTMLDFRKAKTFGQKASLFSRLLSPETFSVDLPAVAEFSTSETMGHSADRL 571
S V D ++ + K +T VD + + + MG +A+ +
Sbjct: 122 ----SSHVLPRSRDGQRMGDWSMK----------DTMIVD--GLWDAFNNYHMGTTAENI 165
Query: 572 AAAFGISREEQDLYAMRSHTLAKEAAENG-LLDDIVP 679
A +G +RE+QD +A S + A + G D+I+P
Sbjct: 166 AQKYGFTREQQDAFAAASQQKTEAAQKAGRFQDEIIP 202
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,829,525
Number of Sequences: 369166
Number of extensions: 1587876
Number of successful extensions: 4398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4371
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)