Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K21
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P12270|TPR_HUMAN Nucleoprotein TPR 37 0.049
sp|Q8T305|MYSP_TAESA Paramyosin 35 0.14
sp|P35418|MYSP_TAESO Paramyosin (Antigen B) (AgB) 35 0.14
sp|P35417|MYSP_ECHGR Paramyosin 35 0.19
sp|Q9N4D6|SEST_CAEEL Putative sestrin 33 0.41
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 33 0.41
sp|Q49407|Y269_MYCGE Hypothetical protein MG269 31 2.0
sp|Q9QZM2|DPOG2_MOUSE DNA polymerase gamma subunit 2, mitoc... 31 2.0
sp|Q9UTJ3|MEU1_SCHPO Meiotic expression up-regulated protei... 31 2.0
sp|Q9M7J4|MFP1_TOBAC MAR binding filament-like protein 1-1 31 2.7
>sp|P12270|TPR_HUMAN Nucleoprotein TPR
Length = 2349
Score = 36.6 bits (83), Expect = 0.049
Identities = 17/60 (28%), Positives = 34/60 (56%)
Frame = +2
Query: 5 IDQSEVKKLQNLTRAKDMEIEQLHSKVENLNVAFDKKCTEYELANKKTIQLQSEIDNMKK 184
+ E+++L+ + + + L S+VENL +K TE ++T+QLQSE+ +++
Sbjct: 1471 VSVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQ 1530
>sp|Q8T305|MYSP_TAESA Paramyosin
Length = 863
Score = 35.0 bits (79), Expect = 0.14
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 44 RAKDMEIEQLHSKVENLNVAFD-KKCTEYELANKKTIQLQSEIDNMKK 184
R KDMEI +L +EN N AF+ + T N ++ SE++N++K
Sbjct: 77 RRKDMEISKLRKDLENANAAFETAEATLRRKHNTMISEISSEVENLQK 124
>sp|P35418|MYSP_TAESO Paramyosin (Antigen B) (AgB)
Length = 863
Score = 35.0 bits (79), Expect = 0.14
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +2
Query: 44 RAKDMEIEQLHSKVENLNVAFD-KKCTEYELANKKTIQLQSEIDNMKK 184
R KDMEI +L +EN N AF+ + T N ++ SE++N++K
Sbjct: 77 RRKDMEISKLRKDLENANAAFETAEATLRRKHNTMISEISSEVENLQK 124
>sp|P35417|MYSP_ECHGR Paramyosin
Length = 863
Score = 34.7 bits (78), Expect = 0.19
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 32 QNLTRAKDMEIEQLHSKVENLNVAFD-KKCTEYELANKKTIQLQSEIDNMKK 184
Q+ R KDMEI + +EN N AF+ + T N ++ SE++N++K
Sbjct: 73 QDAIRRKDMEIANVRKDLENANAAFETAEATLRRKHNTMISEISSEVENLQK 124
>sp|Q9N4D6|SEST_CAEEL Putative sestrin
Length = 517
Score = 33.5 bits (75), Expect = 0.41
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = -1
Query: 180 FMLSISDCN*IVFLLASSYSVHFLSNATFKFSTLLWSCSISISFARVRFCNFFTSL 13
F+++I+ CN +VFL Y++ + F+F S + S+SF+R+ F NF L
Sbjct: 30 FLITIA-CNFVVFLKTFEYNIRIFPDRHFQF-----SFADSVSFSRIYFQNFLRKL 79
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 33.5 bits (75), Expect = 0.41
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2
Query: 20 VKKLQNLTRAKDMEIEQLHSKVENLNVAFDKKCTEYELANKKTIQLQSEIDNMKK 184
+K L+N + E+E+ ++ + + FD T Y+ ANK T+ ++ + +K+
Sbjct: 595 LKNLENTRQRLVNELEEQRTRFDTMTSEFDNLRTNYDSANKNTVAIELTVKQIKE 649
>sp|Q49407|Y269_MYCGE Hypothetical protein MG269
Length = 340
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 2 KIDQSEVKKLQNLTRAKDMEIEQLHSKVENLNVAFDKKCTEYELANKKTIQLQSEI 169
K +SE+ ++Q L AK+ +IE L+ ++ + A K E+E N + + + E+
Sbjct: 113 KQSESEIIQMQQLVEAKEHQIEALNKQLHAIKEANKKLIEEHESINVEELLKEYEV 168
>sp|Q9QZM2|DPOG2_MOUSE DNA polymerase gamma subunit 2, mitochondrial precursor
(Mitochondrial DNA polymerase accessory subunit)
(PolG-beta) (MtPolB) (DNA polymerase gamma accessory 55
kDa subunit) (p55)
Length = 459
Score = 31.2 bits (69), Expect = 2.0
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 62 IEQLHSKVENLNVAFDKKCTEYELANKKTIQLQSEIDNMKKL 187
+EQLHSK + ++V F TE L N IQL+S MK++
Sbjct: 399 LEQLHSKYDEMSVLFSVLVTETTLEN-GLIQLRSRDTTMKEM 439
>sp|Q9UTJ3|MEU1_SCHPO Meiotic expression up-regulated protein 1/2
Length = 776
Score = 31.2 bits (69), Expect = 2.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 68 QLHSKVENLNVAFDKKCTEYELANKKTIQLQSEIDNMKKLNFGA 199
Q S ++ N + +C E E N+K ++ E+D++K+ N A
Sbjct: 484 QYFSNIDESNAFINNQCLELEALNRKNDLIRGELDSLKEKNLVA 527
>sp|Q9M7J4|MFP1_TOBAC MAR binding filament-like protein 1-1
Length = 722
Score = 30.8 bits (68), Expect = 2.7
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 14 SEVKKLQNLTRAKDMEIEQLHSKVENLNVAFDKKCTEYELANKKTIQLQSEIDNMKKLN 190
SE+K+L+ + ++ E+E +NLNV + E + + K+ +Q E K ++
Sbjct: 306 SEIKELKVEVQKRERELELKRESEDNLNVRLNSLLVERDESKKELDAIQKEYSEFKSIS 364
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,376,643
Number of Sequences: 369166
Number of extensions: 959361
Number of successful extensions: 2357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2355
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)