Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K18
(702 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38685|YHBN_ECOLI Protein yhbN precursor 36 0.086
sp|Q9ZD97|TRXB_RICPR Thioredoxin reductase (TRXR) 32 1.6
sp|P94217|SLAP2_BACAN S-layer protein EA1 precursor 31 2.8
sp|P52380|UL33_HHV6U G-protein coupled receptor homolog U12 31 2.8
sp|P25353|YCR6_YEAST Hypothetical protein YCR026C 30 8.1
sp|O87905|C24AA_BACTJ Pesticidal crystal protein cry24Aa (I... 30 8.1
>sp|P38685|YHBN_ECOLI Protein yhbN precursor
Length = 185
Score = 36.2 bits (82), Expect = 0.086
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +2
Query: 134 DSDALFYDYSGRRFVFFKGNRVFSANGVKLENLTISELNVTRPGGFQGRVTAAIVRDKTG 313
+SD D G V F GN + + +K+ ++ VTRPGG QG+ V D G
Sbjct: 39 ESDQQSLDMQGN-VVTFTGNVIVTQGTIKIN---ADKVVVTRPGGEQGKE----VIDGYG 90
Query: 314 KSRTLKFWALQD-GELIAGRVKGNHVKFSRRSIKVTELVTMSSAGYLPEID 463
K T F+ +QD G+ + G H + ++ + V ++ YL ++D
Sbjct: 91 KPAT--FYQMQDNGKPVEGHASQMHYELAK------DFVVLTGNAYLQQVD 133
>sp|Q9ZD97|TRXB_RICPR Thioredoxin reductase (TRXR)
Length = 310
Score = 32.0 bits (71), Expect = 1.6
Identities = 22/84 (26%), Positives = 42/84 (50%)
Frame = +2
Query: 17 DDNIYVVTDKNKVFRIIHSNNSFRVDASFKTLQLPNQLFDSDALFYDYSGRRFVFFKGNR 196
++ +Y+ NKV ++H NSFR + K LQ ++LF + + + N+
Sbjct: 159 EEALYLTNHANKV-TVVHRRNSFRAE---KILQ--DRLFKNPKISVIWDHIIDEIVGSNK 212
Query: 197 VFSANGVKLENLTISELNVTRPGG 268
+ GVK++N+ +E+N+ G
Sbjct: 213 PKAVTGVKIQNVYTNEINLVNCSG 236
>sp|P94217|SLAP2_BACAN S-layer protein EA1 precursor
Length = 862
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = +2
Query: 164 GRRFVFFKGNRVFSANGVKLENLTISELNVTRPGGFQGRVTAAIVRDKTGKSRTLKFWAL 343
G+ ++ G+ VF+A VKL ++T+S+ + + F+ + + T K TL F L
Sbjct: 779 GKLYLDRNGDAVFNAGDVKLGDVTVSQTSDSALPNFKADLYDTLTTKYTDKG-TLVFKVL 837
Query: 344 QDGELIAGRV 373
+D ++I +
Sbjct: 838 KDKDVITSEI 847
>sp|P52380|UL33_HHV6U G-protein coupled receptor homolog U12
Length = 347
Score = 31.2 bits (69), Expect = 2.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 616 LTVKNLFESLWILSWDMVFDMFSSIWKSNIHTISNKNYQSNIIF 485
L VK +F +W + MVF F I+ +H ++ K Y+ + F
Sbjct: 190 LAVKIVFSFIWGVLPTMVFSFFYVIFCKALHDVTEKKYKKTLFF 233
>sp|P25353|YCR6_YEAST Hypothetical protein YCR026C
Length = 742
Score = 29.6 bits (65), Expect = 8.1
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = -1
Query: 543 FGNPTYTLFPTKTTNRTLSFLPITNAPSISGR*PALDIVTNSVTLIDLRE-------NFT 385
FG+P + + K N T F P+T S+ G P+L N+ L DL E N T
Sbjct: 148 FGSPEFDPY-VKYFNGTHEFFPLTIVISLDGFHPSLISKRNTPFLHDLYELKYDGGMNIT 206
Query: 384 *LPFTLPA 361
PF +P+
Sbjct: 207 STPFMVPS 214
>sp|O87905|C24AA_BACTJ Pesticidal crystal protein cry24Aa (Insecticidal delta-endotoxin
CryXXIVA(a)) (Crystaline entomocidal protoxin) (Crystal
protein) (Insecticidal protein Jeg72)
Length = 674
Score = 29.6 bits (65), Expect = 8.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 571 DMVFDMFSSIWKSNIHTISNKNYQSNIIFSSHNKC 467
D+V + S+W ++ KNY+ I ++SH C
Sbjct: 542 DLVKMSYHSVWSFKVYCSELKNYRVRIRYASHGNC 576
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,375,633
Number of Sequences: 369166
Number of extensions: 1368886
Number of successful extensions: 3400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3400
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)