Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K13
(418 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23785|GRN_RAT Granulins precursor [Contains: Acrogranin... 68 7e-12
sp|P28799|GRN_HUMAN Granulins precursor (Proepithelin) (PEP... 67 1e-11
sp|P28798|GRN_MOUSE Granulins precursor (Acrogranin) (Proep... 66 3e-11
sp|P28797|GRN_CAVPO Granulins precursor (Proepithelin) (PEP... 64 9e-11
sp|P81013|GRN1_CYPCA Granulin-1 55 4e-08
sp|P81015|GRN3_CYPCA Granulin-3 54 1e-07
sp|P80930|ENA1_HORSE Antimicrobial peptide eNAP-1 54 1e-07
sp|P81014|GRN2_CYPCA Granulin-2 49 4e-06
sp|P80059|PMD1_LOCMI Pars intercerebralis major peptide D1 ... 49 4e-06
sp|P25777|ORYB_ORYSA Oryzain beta chain precursor 44 2e-04
>sp|P23785|GRN_RAT Granulins precursor [Contains: Acrogranin; Granulin-1 (Granulin G);
Granulin-2 (Granulin F); Granulin-3 (Granulin B)
(Epithelin-2); Granulin-4 (Granulin A) (Epithelin-1);
Granulin-5 (Granulin C); Granulin-6 (Granulin D);
Granulin-7 (Granulin E)]
Length = 588
Score = 68.2 bits (165), Expect = 7e-12
Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP+ T CDL+ +CI + + + P Y V +K + +C
Sbjct: 245 CPQDTVCDLIQSKCISK----------DYTTDLMTKLPGYPVNE-------VKCDLEVSC 287
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC--VTGGC 332
PDG TCC + TG +GCCPF+ VCC D CC G+ C TG C
Sbjct: 288 PDG------YTCCRLNTGAWGCCPFTKAVCCEDHIHCCPAGFQCHTETGTC 332
Score = 60.5 bits (145), Expect = 1e-09
Identities = 33/104 (31%), Positives = 44/104 (42%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP G +CDLV+ RCI + P+++ P R+ ++ K C
Sbjct: 164 CPHGASCDLVHTRCISPTGTH---PLLKKF-------PAQRTNRAVASFSVVCPDAKTQC 213
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
PD TCC + TG YGCCP +CC D CC C
Sbjct: 214 PDDS------TCCELPTGKYGCCPMPNAICCSDHLHCCPQDTVC 251
Score = 58.2 bits (139), Expect = 7e-09
Identities = 34/108 (31%), Positives = 45/108 (41%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP G TC++ + C E +V+ S F K+G+ C
Sbjct: 479 CPAGYTCNVKARTC---------------------EKDAGSVQPSMDLTFGSKVGNVE-C 516
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
G C Q+CC G + CCP+ GVCC D R CC G+HC G
Sbjct: 517 GAGHFCHDNQSCCKDSQGGWACCPYVKGVCCRDGRHCCPIGFHCSAKG 564
Score = 54.7 bits (130), Expect = 7e-08
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
C D C TCC + +G +GCCP VCC D + CC G+ C+ G
Sbjct: 363 CDDFSSCPSNNTCCRLSSGDWGCCPMPEAVCCLDHQHCCPQGFKCMDEG 411
Score = 51.6 bits (122), Expect = 6e-07
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +3
Query: 174 KNNCPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
+++CPDG +C L +G CCPFS GV C D + CC G+HC G
Sbjct: 64 RDHCPDG------YSCLLTVSGTSSCCPFSEGVSCDDGQHCCPRGFHCSADG 109
Score = 48.9 bits (115), Expect = 4e-06
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Frame = +3
Query: 3 GC---PEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGD 173
GC PE C L ++ C Q + ++ + D K V ++TL ++ GD
Sbjct: 384 GCCPMPEAVCC-LDHQHCCPQGFKCMDEGYCQKGDRMVAGLEKMPVRQTTL----LQHGD 438
Query: 174 KNNCPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
C C QTCC G + CC VCC D + CC GY C
Sbjct: 439 IG-CDQHTSCPVGQTCCPSLKGSWACCQLPHAVCCEDRQHCCPAGYTC 485
Score = 48.1 bits (113), Expect = 7e-06
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = +3
Query: 168 GDKNNCPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
G + CPD TCC+M G +GCCP CC D CC G C
Sbjct: 127 GSQFECPDSA------TCCIMIDGSWGCCPMPQASCCEDRVHCCPHGASC 170
>sp|P28799|GRN_HUMAN Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
Paragranulin; Granulin-1 (Granulin G); Granulin-2
(Granulin F); Granulin-3 (Granulin B); Granulin-4
(Granulin A); Granulin-5 (Granulin C); Granulin-6
(Granulin D); Granulin-7 (Granulin E)]
Length = 593
Score = 67.4 bits (163), Expect = 1e-11
Identities = 34/106 (32%), Positives = 50/106 (47%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP+ T CDL+ +C+ + N + + P +TV +K + +C
Sbjct: 247 CPQDTVCDLIQSKCLSKENATTD---------LLTKLPAHTVGD-------VKCDMEVSC 290
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVT 323
PDG TCC + +G +GCCPF+ VCC D CC G+ C T
Sbjct: 291 PDG------YTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDT 330
Score = 59.7 bits (143), Expect = 2e-09
Identities = 34/114 (29%), Positives = 44/114 (38%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP G TCD C P + P +E + ++R C
Sbjct: 322 CPAGFTCDTQKGTC---EQGPHQVPWMEKAPAHLSLPDPQALKRDV------------PC 366
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGGCA*LGS 347
+ C TCC + +G +GCCP VCC D + CC GY CV G GS
Sbjct: 367 DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGS 420
Score = 58.5 bits (140), Expect = 5e-09
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGD-KNN 182
CP G CDLV+ RCI + T AK + P R+ + D ++
Sbjct: 165 CPHGAFCDLVHTRCITPTG---------THPLAK-KLPAQRTNRAVALSSSVMCPDARSR 214
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
CPDG TCC + +G YGCCP CC D CC C
Sbjct: 215 CPDGS------TCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVC 253
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKN-N 182
CP G TC++ + C E + + +T +G K+
Sbjct: 482 CPAGYTCNVKARSC---------------------EKEVVSAQPATFLARSPHVGVKDVE 520
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
C +G C QTCC + CCP+ GVCC D R CC G+ C G
Sbjct: 521 CGEGHFCHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARG 569
Score = 50.8 bits (120), Expect = 1e-06
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 183 CPDGG-QCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
CPD +C TCC+M G +GCCP CC D CC G C
Sbjct: 126 CPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFC 171
Score = 45.4 bits (106), Expect = 5e-05
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
C C QTCC G + CC VCC D + CC GY C
Sbjct: 444 CDQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTC 488
Score = 43.9 bits (102), Expect = 1e-04
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
C C+ +C +G CCPF V C D CC G+HC G
Sbjct: 61 CQVDAHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADG 109
>sp|P28798|GRN_MOUSE Granulins precursor (Acrogranin) (Proepithelin) (PEPI) (PC
cell-derived growth factor) (PCDGF) [Contains: Granulin
1; Granulin 2; Granulin 3; Granulin 4; Granulin 5;
Granulin 6; Granulin 7]
Length = 589
Score = 65.9 bits (159), Expect = 3e-11
Identities = 35/106 (33%), Positives = 51/106 (48%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP+ T CDL+ +C+ ++ T D + P Y V+ +K + +C
Sbjct: 246 CPQDTVCDLIQSKCLSKNY---------TTDLLT-KLPGYPVKE-------VKCDMEVSC 288
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVT 323
P+G TCC + TG +GCCPF+ VCC D CC G+ C T
Sbjct: 289 PEG------YTCCRLNTGAWGCCPFAKAVCCEDHIHCCPAGFQCHT 328
Score = 61.6 bits (148), Expect = 6e-10
Identities = 35/108 (32%), Positives = 49/108 (45%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP G TC++ + C + + I+ PV+ T+ K+G+ C
Sbjct: 480 CPAGYTCNVKARTC-EKDVDFIQPPVLLTLGP--------------------KVGNVE-C 517
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
+G C QTCC G + CCP+ GVCC D R CC G+HC G
Sbjct: 518 GEGHFCHDNQTCCKDSAGVWACCPYLKGVCCRDGRHCCPGGFHCSARG 565
Score = 60.5 bits (145), Expect = 1e-09
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGD-KNN 182
CP G +CDLV+ RC+ + + + P R+ F + D K
Sbjct: 164 CPHGASCDLVHTRCVSPTGT----------HTLLKKFPAQKTNRAVSLPFSVVCPDAKTQ 213
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
CPD TCC + TG YGCCP +CC D CC C
Sbjct: 214 CPDDS------TCCELPTGKYGCCPMPNAICCSDHLHCCPQDTVC 252
Score = 54.3 bits (129), Expect = 1e-07
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
C D +C TCC + +G +GCCP VCC D + CC G+ C+ G
Sbjct: 364 CDDFTRCPTNNTCCKLNSGDWGCCPIPEAVCCSDNQHCCPQGFTCLAQG 412
Score = 53.5 bits (127), Expect = 2e-07
Identities = 29/104 (27%), Positives = 37/104 (35%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP+G C K C S+ P+ ++ P G + C
Sbjct: 99 CPQGFHCSADGKSCFQMSDNPL----------GAVQCP----------------GSQFEC 132
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
PD TCC+M G +GCCP CC D CC G C
Sbjct: 133 PDSA------TCCIMVDGSWGCCPMPQASCCEDRVHCCPHGASC 170
Score = 51.2 bits (121), Expect = 8e-07
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = +3
Query: 180 NCPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
+C G C +C L +G CCPFS GV C D CC G+HC G
Sbjct: 60 SCQTHGHCPAGYSCLLTVSGTSSCCPFSKGVSCGDGYHCCPQGFHCSADG 109
Score = 47.8 bits (112), Expect = 9e-06
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Frame = +3
Query: 3 GC---PEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGD 173
GC PE C N+ C Q + + D+ K ++T ++IGD
Sbjct: 385 GCCPIPEAVCCS-DNQHCCPQGFTCLAQGYCQKGDTMVAGLEKIPARQTT----PLQIGD 439
Query: 174 KNNCPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
C C QTCC G + CC VCC D + CC GY C
Sbjct: 440 IG-CDQHTSCPVGQTCCPSLKGSWACCQLPHAVCCEDRQHCCPAGYTC 486
>sp|P28797|GRN_CAVPO Granulins precursor (Proepithelin) (PEPI) [Contains: Acrogranin;
Granulin-1; Granulin-2; Granulin-3; Granulin-4;
Granulin-5; Granulin-6; Granulin-7]
Length = 591
Score = 64.3 bits (155), Expect = 9e-11
Identities = 33/106 (31%), Positives = 49/106 (46%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP+ T CDL RC+ Q+ + + P +TV + ++ + +C
Sbjct: 247 CPQDTVCDLRQSRCLSQNKAK----------TLLTKLPSWTV-------WDVECDQEVSC 289
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVT 323
P+G QTCC + +G +GCCPF VCC D CC + C T
Sbjct: 290 PEG------QTCCRLQSGKWGCCPFPKAVCCEDHVHCCPERFRCHT 329
Score = 63.5 bits (153), Expect = 2e-10
Identities = 36/108 (33%), Positives = 47/108 (43%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQSNEPIEWPVVETIDSAKIETPKYTVERSTLREFMIKIGDKNNC 185
CP G TC++ + C + D A + P ST + GD++ C
Sbjct: 479 CPAGYTCNVKARSC------------EKAADGAHLAAP--LAVGSTGGVMDVACGDRHFC 524
Query: 186 PDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
D QTCC G + CCPF GVCC D R CC G+HC + G
Sbjct: 525 HDE------QTCCRDSRGGWACCPFHQGVCCKDQRHCCPAGFHCESQG 566
Score = 60.1 bits (144), Expect = 2e-09
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Frame = +3
Query: 6 CPEGTTCDLVNKRCIHQ-SNEPI--EWPVVETIDSAKIETPKYT--VERSTLREFMIKIG 170
CP G +CDLV+ RC+ + P+ + P T + TP + + + L +I
Sbjct: 151 CPHGASCDLVHIRCVTALGSHPLTTKLPAQRTNYTGAEGTPVVSPGLLPAALPTSVI--- 207
Query: 171 DKNNCPDG-GQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
CPD QC TCCL+ +G YGCCP +CC D CC C
Sbjct: 208 ----CPDSRSQCPDDTTCCLLASGEYGCCPMPNAICCSDHLHCCPQDTVC 253
Score = 48.1 bits (113), Expect = 7e-06
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 183 CPDGG-QCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
CP G +C TCC M G +GCCP CC D CC G C
Sbjct: 112 CPGGEFECPDSSTCCHMLDGSWGCCPMPQASCCEDRVHCCPHGASC 157
Score = 46.6 bits (109), Expect = 2e-05
Identities = 21/50 (42%), Positives = 24/50 (48%)
Frame = +3
Query: 180 NCPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHCVTGG 329
NCP G +C L G CCPFS + C D CC G+HC T G
Sbjct: 52 NCPIG------HSCVLTAAGTAACCPFSQAMACGDGHHCCPYGFHCSTDG 95
Score = 45.8 bits (107), Expect = 3e-05
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
C C QTCC G + CC VCC D + CC GY C
Sbjct: 441 CDQHASCPVRQTCCPKLGGGWACCQLPHAVCCEDGQHCCPAGYTC 485
Score = 33.1 bits (74), Expect = 0.23
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 180 NCPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCC 278
+C + C CC + +G +GCCP S G C
Sbjct: 377 SCDEVVSCRPGNICCRLASGEWGCCPSSEGYLC 409
>sp|P81013|GRN1_CYPCA Granulin-1
Length = 57
Score = 55.5 bits (132), Expect = 4e-08
Identities = 24/45 (53%), Positives = 26/45 (57%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
CPDG TCCL G + CCPFS+G CC D CC GYHC
Sbjct: 10 CPDG------TTCCLSPYGVWYCCPFSMGQCCRDGIHCCRHGYHC 48
>sp|P81015|GRN3_CYPCA Granulin-3
Length = 57
Score = 53.9 bits (128), Expect = 1e-07
Identities = 22/45 (48%), Positives = 24/45 (53%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
C G C TCC G + CCPF +G CC D R CC GYHC
Sbjct: 4 CDAGITCPSGTTCCRSPFGVWYCCPFLMGQCCRDGRHCCRHGYHC 48
>sp|P80930|ENA1_HORSE Antimicrobial peptide eNAP-1
Length = 46
Score = 53.9 bits (128), Expect = 1e-07
Identities = 21/43 (48%), Positives = 24/43 (55%)
Frame = +3
Query: 183 CPDGGQCAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGY 311
C +G C QTCC G CCP+S GVCC D R CC G+
Sbjct: 4 CGEGHFCHDXQTCCRASQGGXACCPYSQGVCCADQRHCCPVGF 46
>sp|P81014|GRN2_CYPCA Granulin-2
Length = 57
Score = 48.9 bits (115), Expect = 4e-06
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +3
Query: 201 CAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
C TCC G + CCPF +G CC D R CC GY C
Sbjct: 10 CPSRTTCCRSPFGVWYCCPFLMGQCCRDGRHCCRHGYRC 48
>sp|P80059|PMD1_LOCMI Pars intercerebralis major peptide D1 (PMP-D1)
Length = 54
Score = 48.9 bits (115), Expect = 4e-06
Identities = 19/39 (48%), Positives = 21/39 (53%)
Frame = +3
Query: 201 CAGLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGYHC 317
C G +TCC G GCCP+ GVCC D CC G C
Sbjct: 7 CPGTETCCTTPQGEEGCCPYKEGVCCLDGIHCCPSGTVC 45
>sp|P25777|ORYB_ORYSA Oryzain beta chain precursor
Length = 471
Score = 43.5 bits (101), Expect = 2e-04
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 171 DKNNCPDGGQCA---GLQTCCLMYTGHYGCCPFSLGVCCPDLRTCCAPGY 311
D +CP G C G + CL++ GCCP CC D +CC P Y
Sbjct: 387 DNFSCPAGSTCCCAFGFRNLCLVW----GCCPVEGATCCKDHASCCPPDY 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,476,672
Number of Sequences: 369166
Number of extensions: 1101357
Number of successful extensions: 3589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3540
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)