Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K10
(563 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 88 1e-17
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 88 2e-17
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 68 1e-11
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 67 4e-11
sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen relat... 66 7e-11
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 65 9e-11
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 65 9e-11
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 64 3e-10
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 64 3e-10
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 62 8e-10
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 88.2 bits (217), Expect = 1e-17
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 5/114 (4%)
Frame = +3
Query: 3 LAKTKTFSHSV--SNGQYGENLA-SSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQIN 173
LA T+ HS S GQ GENLA +SY+ TG WY EIK+Y F ++
Sbjct: 46 LASTRILKHSPESSRGQCGENLAWASYDQ------TGKEVADRWYSEIKNYNF-QQPGFT 98
Query: 174 SKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVI--GHFKENVLSP 329
S GHF+ +VWK+TK G G+A + +G+ +V +Y PAGNV+ G F+ENVL P
Sbjct: 99 SGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 87.8 bits (216), Expect = 2e-17
Identities = 52/121 (42%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Frame = +3
Query: 3 LAKTKTFSHSV--SNGQYGENLA-SSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQIN 173
LA T+ HS S GQ GENLA +SY+ TG WY EIK Y F ++
Sbjct: 46 LASTRILKHSPESSRGQCGENLAWASYDQ------TGKDVADRWYSEIKSYNF-QQPGFT 98
Query: 174 SKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVI--GHFKENVLSPTGPPPK 347
S GHF+ +VWK+TK G G+A + +G+ +V +Y PAGN++ G F+ENV PPPK
Sbjct: 99 SGTGHFTAMVWKNTKKIGVGKASASDGSSFVVARYFPAGNIVNQGFFEENV-----PPPK 153
Query: 348 R 350
+
Sbjct: 154 K 154
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 68.2 bits (165), Expect = 1e-11
Identities = 43/103 (41%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Frame = +3
Query: 18 TFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQ 197
T +HS G YGENLA Y+ G AA WY+EI +Y F +S GHF+Q
Sbjct: 205 TLTHS--GGPYGENLALGYD--------GPAAVDAWYNEISNYDFSNPG-FSSNTGHFTQ 253
Query: 198 VVWKDTKTAGFGRAQSDN--GNFVIVGQYKPAGNVIGHFKENV 320
VVWK T G G G++VI Y PAGN G + +NV
Sbjct: 254 VVWKSTTQVGCGIKTCGGAWGDYVIC-SYDPAGNYEGEYADNV 295
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 66.6 bits (161), Expect = 4e-11
Identities = 33/89 (37%), Positives = 48/89 (53%)
Frame = +3
Query: 36 SNGQYGENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDT 215
S+G YGENLA+++ A + W DE + Y + S + GH++QVVW+++
Sbjct: 72 SHGPYGENLAAAFPQ-----LNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNS 126
Query: 216 KTAGFGRAQSDNGNFVIVGQYKPAGNVIG 302
G R +S+NG F I Y P GN IG
Sbjct: 127 VRLGCARVRSNNGWFFITCNYDPPGNFIG 155
>sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen related in Sc 2)
Length = 329
Score = 65.9 bits (159), Expect = 7e-11
Identities = 40/98 (40%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Frame = +3
Query: 36 SNGQYGENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDT 215
S G YGENLA Y + TG + WY+EI Y + + GHF+QVVWK T
Sbjct: 239 SGGPYGENLALGYGT------TG--SVDAWYNEITSYDYSNPG-FSESAGHFTQVVWKGT 289
Query: 216 KTAGFGRAQSDN--GNFVIVGQYKPAGNVIGHFKENVL 323
G G G+++I YK AGNVIG F +NV+
Sbjct: 290 SEVGCGLKSCGGEWGDYIICS-YKAAGNVIGEFADNVM 326
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 65.5 bits (158), Expect = 9e-11
Identities = 45/127 (35%), Positives = 54/127 (42%), Gaps = 1/127 (0%)
Frame = +3
Query: 36 SNGQYGENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDT 215
S+G YGENLA Y T A WY EI Y + + GHF+QVVWK T
Sbjct: 72 SDGPYGENLALGY--------TDTGAVDAWYGEISKYNYSNPG-FSESTGHFTQVVWKST 122
Query: 216 KTAGFG-RAQSDNGNFVIVGQYKPAGNVIGHFKENVLSPTGPPPKREEPRIDANQNKVGT 392
G G + N IV Y P GN +G F E V EP I + +
Sbjct: 123 AEIGCGYKYCGTTWNNYIVCSYNPPGNYLGEFAEEV-----------EPLISTVSSSSSS 171
Query: 393 SKSSSKT 413
S S+S T
Sbjct: 172 SSSTSTT 178
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 65.5 bits (158), Expect = 9e-11
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 36 SNGQYGENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKD 212
S+GQYGENLA G T A + W DE + Y + ++ GH++QVVW++
Sbjct: 79 SHGQYGENLAQG----SGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRN 134
Query: 213 TKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 302
+ G R + +NG +V+ Y P GNVIG
Sbjct: 135 SVRVGCARVKCNNGGYVVSCNYDPPGNVIG 164
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 63.9 bits (154), Expect = 3e-10
Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +3
Query: 51 GENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKDTKTAG 227
GENLA G FTG AA Q W E DY + + K+ GH++QVVW+++ G
Sbjct: 76 GENLAKG-----GGDFTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLG 130
Query: 228 FGRAQSDNGNFVIVGQYKPAGNVIG 302
GRA+ +NG + I Y P GN +G
Sbjct: 131 CGRARCNNGWWFISCNYDPVGNWVG 155
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 63.5 bits (153), Expect = 3e-10
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 36 SNGQYGENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKD 212
S+GQYGENLA G T A + W +E + Y + ++ GH++QVVW++
Sbjct: 79 SHGQYGENLAWG----SGDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRN 134
Query: 213 TKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 302
+ G R Q +NG +++ Y P GNVIG
Sbjct: 135 SVRVGCARVQCNNGGYIVSCNYDPPGNVIG 164
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 62.4 bits (150), Expect = 8e-10
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +3
Query: 36 SNGQYGENLASSYNSREGYVFTGDAATQNWYDEIKDYKFGEESQINSKI-GHFSQVVWKD 212
S+GQYGENLA G T A + W DE + Y + ++ GH++QVVW++
Sbjct: 79 SHGQYGENLAEG----SGDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRN 134
Query: 213 TKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 302
+ G R Q +NG +V+ Y P GN G
Sbjct: 135 SVRVGCARVQCNNGGYVVSCNYDPPGNYRG 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,428,128
Number of Sequences: 369166
Number of extensions: 1359963
Number of successful extensions: 4556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4480
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)