Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K09-2
(198 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O44125|RL37_SCHMA 60S ribosomal protein L37 111 6e-25
sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37 110 1e-24
sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A 107 7e-24
sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (... 105 4e-23
sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1) 105 4e-23
sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37 103 1e-22
sp|Q9P836|RL37_CANAL 60S ribosomal protein L37 102 3e-22
sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55) 101 6e-22
sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55) 101 6e-22
sp|P49622|RL37_CAEEL 60S ribosomal protein L37 99 2e-21
>sp|O44125|RL37_SCHMA 60S ribosomal protein L37
Length = 88
Score = 111 bits (277), Expect = 6e-25
Identities = 46/66 (69%), Positives = 56/66 (84%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NK+HT CRRCG+ S+HIQKKTC+SC YP+ ++R +NWS KA+ RRTTGTGR LHLK +HR
Sbjct: 13 NKSHTQCRRCGRKSYHIQKKTCSSCGYPSARLRKYNWSEKAKRRRTTGTGRMLHLKRVHR 72
Query: 181 RFKNGF 198
RFK GF
Sbjct: 73 RFKQGF 78
>sp|Q9C0T1|RL37_EMENI 60S ribosomal protein L37
Length = 92
Score = 110 bits (274), Expect = 1e-24
Identities = 45/66 (68%), Positives = 54/66 (81%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NKTHT CRRCG+ S+HIQK TCA+C YP K R +NWS KA+ R+TTG+GR HL+D+HR
Sbjct: 13 NKTHTLCRRCGRRSYHIQKSTCANCGYPAAKTRKYNWSEKAKRRKTTGSGRTAHLRDVHR 72
Query: 181 RFKNGF 198
RFKNGF
Sbjct: 73 RFKNGF 78
>sp|Q9VXX8|RL371_DROME Probable 60S ribosomal protein L37-A
Length = 93
Score = 107 bits (268), Expect = 7e-24
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NKTHT CRRCG+SS+HIQK TCA C YP K+R +NWS KA+ R+TTGTGR HLK + R
Sbjct: 13 NKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTGRMQHLKVVRR 72
Query: 181 RFKNGF 198
RF+NGF
Sbjct: 73 RFRNGF 78
>sp|P05733|RL37B_SCHPO 60S ribosomal protein L37-B (L37-2) (YL27)
Length = 91
Score = 105 bits (261), Expect = 4e-23
Identities = 45/66 (68%), Positives = 50/66 (75%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTGTGR +LK +HR
Sbjct: 13 NKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHR 72
Query: 181 RFKNGF 198
FKNGF
Sbjct: 73 SFKNGF 78
>sp|P59289|RL37A_SCHPO 60S ribosomal protein L37-A (L37-1)
Length = 89
Score = 105 bits (261), Expect = 4e-23
Identities = 45/66 (68%), Positives = 50/66 (75%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NK+HT CRRCGK SFHIQK TCA C YP K R +NW KA+ RRTTGTGR +LK +HR
Sbjct: 13 NKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHR 72
Query: 181 RFKNGF 198
FKNGF
Sbjct: 73 SFKNGF 78
>sp|Q962S7|RL37_SPOFR 60S ribosomal protein L37
Length = 92
Score = 103 bits (257), Expect = 1e-22
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NKTHT CRRCG+SS+HIQK CA C YP K+R ++WS KA+ R+TTGTGR HLK + R
Sbjct: 13 NKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRRKTTGTGRMRHLKIVRR 72
Query: 181 RFKNGF 198
RF+NGF
Sbjct: 73 RFRNGF 78
>sp|Q9P836|RL37_CANAL 60S ribosomal protein L37
Length = 88
Score = 102 bits (254), Expect = 3e-22
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NK+HT C RCG+ SFH+QKKTC+SC YP K+R NW+ KA+ RRTTGTGR +LK + R
Sbjct: 11 NKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKMRSHNWALKAKRRRTTGTGRMAYLKHVTR 70
Query: 181 RFKNGF 198
RFKNGF
Sbjct: 71 RFKNGF 76
>sp|P51402|RL37B_YEAST 60S ribosomal protein L37-B (L35) (YP55)
Length = 88
Score = 101 bits (251), Expect = 6e-22
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NK+HT C RCG+ SFH+QKKTC+SC YP+ K R NW+ KA+ R TTGTGR +LK + R
Sbjct: 13 NKSHTLCNRCGRRSFHVQKKTCSSCGYPSAKTRSHNWAAKAKRRHTTGTGRMRYLKHVSR 72
Query: 181 RFKNGF 198
RFKNGF
Sbjct: 73 RFKNGF 78
>sp|P49166|RL37A_YEAST 60S ribosomal protein L37-A (L35) (YP55)
Length = 88
Score = 101 bits (251), Expect = 6e-22
Identities = 42/66 (63%), Positives = 50/66 (75%)
Frame = +1
Query: 1 NKTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHR 180
NK+HT C RCG+ SFH+QKKTC+SC YP K R +NW KA+ R TTGTGR +LK + R
Sbjct: 13 NKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGRMRYLKHVSR 72
Query: 181 RFKNGF 198
RFKNGF
Sbjct: 73 RFKNGF 78
>sp|P49622|RL37_CAEEL 60S ribosomal protein L37
Length = 91
Score = 99.4 bits (246), Expect = 2e-21
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = +1
Query: 4 KTHTFCRRCGKSSFHIQKKTCASCAYPNPKIRHFNWSTKAQGRRTTGTGRCLHLKDIHRR 183
K+HT C+RCGKSSFHIQKK CASC Y + K R +NW K+ RRTTGTGR HL+D++ R
Sbjct: 14 KSHTLCKRCGKSSFHIQKKRCASCGYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNAR 73
Query: 184 FKNGF 198
F+NGF
Sbjct: 74 FRNGF 78
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,471,964
Number of Sequences: 369166
Number of extensions: 341252
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)