Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K09-1
(572 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19199|POL_COYMV Putative polyprotein [Contains: Coat pr... 38 0.016
sp|P80303|NUCB2_HUMAN Nucleobindin 2 precursor (DNA-binding... 35 0.10
sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A... 35 0.10
sp|P34623|YO87_CAEEL Hypothetical protein ZK1236.7 in chrom... 35 0.13
sp|Q8N4C8|MINK1_HUMAN Misshapen-like kinase 1 (Mitogen-acti... 35 0.17
sp|Q9JM52|MINK1_MOUSE Misshapen-like kinase 1 (Mitogen-acti... 35 0.17
sp|P16947|M49_STRP9 M protein, serotype 49 precursor 34 0.23
sp|Q5P9F6|SYT_ANAMM Threonyl-tRNA synthetase (Threonine--tR... 34 0.23
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 34 0.30
sp|P26805|GAG_MLVFP Gag polyprotein (Core polyprotein) [Con... 34 0.30
>sp|P19199|POL_COYMV Putative polyprotein [Contains: Coat protein; Protease ; Reverse
transcriptase ; Ribonuclease H ]
Length = 1886
Score = 38.1 bits (87), Expect = 0.016
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Frame = -1
Query: 536 SESRSPVIHRKHR--DHPKSYALPEKKESEKLVENGXXXXXXXXXXKGSPELTHNINPKD 363
SE+ +P I D +A ++ +S++ +++G + SPE N +
Sbjct: 395 SETSTPTIDESEAIIDEFLEHAYEQRCDSDESLQSGDPRKYEYPTPQSSPEHLDNESRSR 454
Query: 362 FSPAESGEMRDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRIKE 183
S A S M+D DV E ++ ++K+ ++ ++ + +A+EE +I + E K+ +E
Sbjct: 455 SSSASSTSMQD-DVEEIVRLMKEMRMKKQKKKKAQQALSSQAQEEPIIEENIEENKQAQE 513
Query: 182 EVTR 171
E T+
Sbjct: 514 EPTQ 517
>sp|P80303|NUCB2_HUMAN Nucleobindin 2 precursor (DNA-binding protein NEFA) (Gastric cancer
antigen Zg4)
Length = 420
Score = 35.4 bits (80), Expect = 0.10
Identities = 30/124 (24%), Positives = 53/124 (42%)
Frame = -1
Query: 548 KMPRSESRSPVIHRKHRDHPKSYALPEKKESEKLVENGXXXXXXXXXXKGSPELTHNINP 369
K ES+ + +KH +HPK K + +++ E T ++P
Sbjct: 199 KRKEEESKFEEMKKKHENHPKVNHPGSKDQLKEVWEE-----------------TDGLDP 241
Query: 368 KDFSPAESGEMRDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRI 189
DF P ++ D + L +Q+L + K E + DPK EE+ ++ + E R+
Sbjct: 242 NDFDPKTFFKLHDVNSDGFLDEQELEALFTKELE---KVYDPKNEEDDMVEME-EERLRM 297
Query: 188 KEEV 177
+E V
Sbjct: 298 REHV 301
>sp|Q9QWF0|CAF1A_MOUSE Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin
assembly factor I p150 subunit) (CAF-I 150 kDa subunit)
(CAF-Ip150)
Length = 911
Score = 35.4 bits (80), Expect = 0.10
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Frame = -1
Query: 368 KDFSPAESGEMRDSDVLEDLKDQDLNE---------IEKKVQETRKRNVDPKA-EEERLI 219
K+ E E R+ D E + Q L E +E K++E RK+ + + EEE+ +
Sbjct: 351 KELKEKERREKREKDEKEKAEKQRLKEEKRKERQEALEAKLEEKRKKEEEKRLREEEKRL 410
Query: 218 RQKWAEEKRIKEE---VTRRFE 162
R+ EEKRIK E +TR F+
Sbjct: 411 RE---EEKRIKAEKAEITRFFQ 429
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 335 RDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRIKEE 180
RD + + K++ EI + +E RK K EEE+ +++K EKR K+E
Sbjct: 320 RDREQQREEKEKLREEIRRAKEEARK-----KKEEEKELKEKERREKREKDE 366
>sp|P34623|YO87_CAEEL Hypothetical protein ZK1236.7 in chromosome III
Length = 324
Score = 35.0 bits (79), Expect = 0.13
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = -1
Query: 350 ESGEMRDSDVLE--DLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRIKEE 180
E +MR+ +V E + K ++ +K+ +E K D KAEEERL +++ +E++ EE
Sbjct: 144 EKRQMREYEVREREERKRREEEREKKRDEERAKEEADEKAEEERLRKEREEKERKEHEE 202
>sp|Q8N4C8|MINK1_HUMAN Misshapen-like kinase 1 (Mitogen-activated protein kinase kinase
kinase kinase 6) (MAPK/ERK kinase kinase kinase 6) (MEK
kinase kinase 6) (MEKKK 6) (Misshapen/NIK-related
kinase) (GCK family kinase MiNK)
Length = 1332
Score = 34.7 bits (78), Expect = 0.17
Identities = 26/135 (19%), Positives = 56/135 (41%)
Frame = -1
Query: 548 KMPRSESRSPVIHRKHRDHPKSYALPEKKESEKLVENGXXXXXXXXXXKGSPELTHNINP 369
++ + + R P H KH H + + E+KE + VE
Sbjct: 374 QLQQQQQRDPEAHIKHLLHQRQRRIEEQKEERRRVEE-----------------QQRRER 416
Query: 368 KDFSPAESGEMRDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRI 189
+ E + R + ++ L+ ++ ++ QE +++ ++ + + ERL RQ E +
Sbjct: 417 EQRKLQEKEQQRRLEDMQALRREEERRQAEREQEYKRKQLEEQRQSERLQRQLQQEHAYL 476
Query: 188 KEEVTRRFEIYIQKQ 144
K ++ + +QKQ
Sbjct: 477 KSLQQQQQQQQLQKQ 491
>sp|Q9JM52|MINK1_MOUSE Misshapen-like kinase 1 (Mitogen-activated protein kinase kinase
kinase kinase 6) (MAPK/ERK kinase kinase kinase 6) (MEK
kinase kinase 6) (MEKKK 6) (Misshapen/NIK-related
kinase) (GCK family kinase MiNK)
Length = 1308
Score = 34.7 bits (78), Expect = 0.17
Identities = 26/135 (19%), Positives = 56/135 (41%)
Frame = -1
Query: 548 KMPRSESRSPVIHRKHRDHPKSYALPEKKESEKLVENGXXXXXXXXXXKGSPELTHNINP 369
++ + + R P H KH H + + E+KE + VE
Sbjct: 374 QLQQQQQRDPEAHIKHLLHQRQRRIEEQKEERRRVEE-----------------QQRRER 416
Query: 368 KDFSPAESGEMRDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRI 189
+ E + R + ++ L+ ++ ++ QE +++ ++ + + ERL RQ E +
Sbjct: 417 EQRKLQEKEQQRRLEDMQALRREEERRQAEREQEYKRKQLEEQRQSERLQRQLQQEHAYL 476
Query: 188 KEEVTRRFEIYIQKQ 144
K ++ + +QKQ
Sbjct: 477 KSLQQQQQQQQLQKQ 491
>sp|P16947|M49_STRP9 M protein, serotype 49 precursor
Length = 389
Score = 34.3 bits (77), Expect = 0.23
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -1
Query: 320 LEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRIKEEVTRRFEIYIQKQ 144
LE L+ Q +K QE K++ + K E+E + + E++ + EV +R++ +QKQ
Sbjct: 95 LEKLEHQSQVAADKHYQEQAKKHQEYKQEQEERQKNQEQLERKYQREVEKRYQEQLQKQ 153
>sp|Q5P9F6|SYT_ANAMM Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 636
Score = 34.3 bits (77), Expect = 0.23
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -1
Query: 350 ESGEMRDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRIK--EEV 177
E+G D D+ L ++D IE+K+ D A++ER +R+ W E+ IK E++
Sbjct: 101 ENGFYYDFDLSHSLSEKDFEAIERKM-------ADIIAKDERFVREVWpreRAIKFFEDL 153
Query: 176 TRRFEIYI 153
+++ I
Sbjct: 154 GEHYKLEI 161
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 33.9 bits (76), Expect = 0.30
Identities = 23/74 (31%), Positives = 42/74 (56%)
Frame = -1
Query: 365 DFSPAESGEMRDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRIK 186
+F ++R+ D +E QD N +K V+E R R ++ K ++E+L + EKRIK
Sbjct: 166 EFRKNLENKLRELDRIE----QDYNNFKKTVEEKRARVLELKKDKEKLEDEIKNLEKRIK 221
Query: 185 EEVTRRFEIYIQKQ 144
++ +F+ Y +K+
Sbjct: 222 -DIKDQFDEYEKKR 234
>sp|P26805|GAG_MLVFP Gag polyprotein (Core polyprotein) [Contains: Matrix protein p15;
RNA binding phosphoprotein p12; Capsid protein p30;
Nucleocapsid protein p10]
Length = 538
Score = 33.9 bits (76), Expect = 0.30
Identities = 17/56 (30%), Positives = 33/56 (58%)
Frame = -1
Query: 335 RDSDVLEDLKDQDLNEIEKKVQETRKRNVDPKAEEERLIRQKWAEEKRIKEEVTRR 168
R + LEDLK++ L ++ ++ ++ + P+ EER+ R+ +E+R + E RR
Sbjct: 407 RKLERLEDLKNKTLGDLVREAEKIFNKRETPEEREERVRRETEEKEERRRAEDERR 462
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,192,347
Number of Sequences: 369166
Number of extensions: 665720
Number of successful extensions: 3779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3734
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)