Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J20
(852 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 538 e-153
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 538 e-153
sp|P53458|ACT5_DIPDE Actin-5 538 e-153
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 538 e-152
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 538 e-152
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 538 e-152
sp|P92176|ACT2_LUMTE Actin-2 537 e-152
sp|P12716|ACTC_PISOC Actin, cytoplasmic 537 e-152
sp|P53470|ACT1_SCHMA Actin-1 536 e-152
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 536 e-152
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 538 bits (1387), Expect = e-153
Identities = 264/280 (94%), Positives = 274/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLG+E+ GIH
Sbjct: 217 LCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMEAAGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 538 bits (1387), Expect = e-153
Identities = 264/280 (94%), Positives = 275/280 (98%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+E+ GIH
Sbjct: 217 LCYVALDFEQEMQTATSSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAAGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 538 bits (1386), Expect = e-153
Identities = 266/280 (95%), Positives = 274/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 92 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 151
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 152 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 211
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM A++SS+LEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES GIH
Sbjct: 212 LCYVALDFEQEMSNAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIH 271
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTMYPGI+DRMQKEISALAP TMKIKIVAPPER
Sbjct: 272 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQKEISALAPSTMKIKIVAPPER 331
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 332 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 538 bits (1385), Expect = e-152
Identities = 263/280 (93%), Positives = 274/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVIDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA++QPSFLG+ES GIH
Sbjct: 217 LCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMYQPSFLGMESAGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 538 bits (1385), Expect = e-152
Identities = 264/280 (94%), Positives = 273/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM TA+ SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLG+ES GIH
Sbjct: 217 LCYVALDFEQEMHTAATSSSLEKSYELPDGQVITIGNERFRCPEAVFQPSFLGMESAGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 538 bits (1385), Expect = e-152
Identities = 263/280 (93%), Positives = 274/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLG+E+ GIH
Sbjct: 217 LCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMEAAGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 537 bits (1384), Expect = e-152
Identities = 265/280 (94%), Positives = 274/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN+PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM TASASSSLEKSYELPDGQVITIGNERFRCPEA+F SFLG+ESVGIH
Sbjct: 217 LCYVALDFEQEMNTASASSSLEKSYELPDGQVITIGNERFRCPEAMFHASFLGMESVGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGG+TM+PGIADRMQKEI+ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 537 bits (1383), Expect = e-152
Identities = 263/280 (93%), Positives = 274/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV DS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVFDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGV+HTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM+TA++SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG+ES GIH
Sbjct: 217 LCYVALDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKE++ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEVTALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 536 bits (1382), Expect = e-152
Identities = 265/280 (94%), Positives = 274/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDY+MKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM TA++SS+LEKSYELPDGQVITIGNERFRCPEALFQPSFLG+E+ GIH
Sbjct: 217 LCYVALDFEQEMGTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEASGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLY+N VLSGGSTMYPGIADRMQKEISALAP TMKIKIVAPPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 536 bits (1382), Expect = e-152
Identities = 263/280 (93%), Positives = 273/280 (97%)
Frame = +3
Query: 3 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDS 182
VAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DS
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDS 156
Query: 183 GDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 362
GDGVTHTVPIYEGYALPHAI+RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK
Sbjct: 157 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 216
Query: 363 LCYIALDFDAEMRTASASSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGLESVGIH 542
LCY+ALDF+ EM+TAS SSSLEKSYELPDGQVITIGNERFRCPEA FQPSFLG+E+ GIH
Sbjct: 217 LCYVALDFEQEMQTASTSSSLEKSYELPDGQVITIGNERFRCPEATFQPSFLGMEAAGIH 276
Query: 543 ETTYNSIMKCDVDIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPER 722
ETTYNSIMKCDVDIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPER 336
Query: 723 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 842
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,204,852
Number of Sequences: 369166
Number of extensions: 2083303
Number of successful extensions: 6451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6279
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)