Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J13
(437 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00014|CYC_MACGI Cytochrome c 193 2e-49
sp|Q640U4|CYC_XENTR Cytochrome c 191 6e-49
sp|P00011|CYC_CANFA Cytochrome c 188 4e-48
sp|Q5RFH4|CYC_PONPY Cytochrome c >gi|42560195|sp|P99998|CYC... 187 9e-48
sp|Q6QLW4|CYC_PECGU Cytochrome c 187 9e-48
sp|P00013|CYC_MINSC Cytochrome c 186 1e-47
sp|P00018|CYC_DRONO Cytochrome c 186 2e-47
sp|P00008|CYC_RABIT Cytochrome c 186 2e-47
sp|P62897|CYC_MOUSE Cytochrome c, somatic >gi|51702227|sp|P... 186 2e-47
sp|P00028|CYC_LAMTR Cytochrome c 185 3e-47
>sp|P00014|CYC_MACGI Cytochrome c
Length = 104
Score = 193 bits (490), Expect = 2e-49
Identities = 88/104 (84%), Positives = 96/104 (92%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKKIFVQKC+QCHTVEKGGKHKTGPNLNGIFGRKTGQAP F YT ANK KGIIWG
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLNGIFGRKTGQAPGFTYTDANKNKGIIWG 60
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
DTL EYLENPKKYIPGTKM+FAG+KK+ ERADLIAYL+K+T E
Sbjct: 61 EDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKATNE 104
>sp|Q640U4|CYC_XENTR Cytochrome c
Length = 105
Score = 191 bits (485), Expect = 6e-49
Identities = 87/104 (83%), Positives = 96/104 (92%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKKIFVQKC+QCHTVEK GKHKTGPNL G+FGRKTGQAP F YT ANK KGI+WG
Sbjct: 2 GDVEKGKKIFVQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWG 61
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
DTLFEYLENPKKYIPGTKM+FAG+KK+NERADLIAYL+KST E
Sbjct: 62 EDTLFEYLENPKKYIPGTKMIFAGIKKKNERADLIAYLKKSTSE 105
>sp|P00011|CYC_CANFA Cytochrome c
Length = 104
Score = 188 bits (478), Expect = 4e-48
Identities = 85/104 (81%), Positives = 95/104 (91%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKKIFVQKC+QCHTVEKGGKHKTGPNL+G+FGRKTGQAP F YT ANK KGI WG
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWG 60
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
+TL EYLENPKKYIPGTKM+FAG+KK ERADLIAYL+K+TKE
Sbjct: 61 EETLMEYLENPKKYIPGTKMIFAGIKKTGERADLIAYLKKATKE 104
>sp|Q5RFH4|CYC_PONPY Cytochrome c
sp|P99998|CYC_PANTR Cytochrome c
sp|Q6WUX8|CYC_GORGO Cytochrome c
sp|P99999|CYC_HUMAN Cytochrome c
Length = 105
Score = 187 bits (475), Expect = 9e-48
Identities = 83/104 (79%), Positives = 94/104 (90%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKKIF+ KCSQCHTVEKGGKHKTGPNL+G+FGRKTGQAP + YT ANK KGIIWG
Sbjct: 2 GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIWG 61
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
DTL EYLENPKKYIPGTKM+F G+KK+ ERADLIAYL+K+T E
Sbjct: 62 EDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE 105
>sp|Q6QLW4|CYC_PECGU Cytochrome c
Length = 109
Score = 187 bits (475), Expect = 9e-48
Identities = 85/106 (80%), Positives = 95/106 (89%)
Frame = +2
Query: 5 IPPGDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGI 184
IP GD KGKK+FVQ+C+QCHTVE GGKHKTGPNL+G+FGRKTGQAP F YT ANK KGI
Sbjct: 4 IPAGDAAKGKKVFVQRCAQCHTVEAGGKHKTGPNLSGLFGRKTGQAPGFSYTDANKNKGI 63
Query: 185 IWGVDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTK 322
WG DTL+ YLENPKKYIPGTKM+FAG+KK+NERADLIAYLE+STK
Sbjct: 64 TWGKDTLWVYLENPKKYIPGTKMIFAGLKKKNERADLIAYLEESTK 109
>sp|P00013|CYC_MINSC Cytochrome c
Length = 104
Score = 186 bits (473), Expect = 1e-47
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKKIFVQKC+QCHTVEKGGKHKTGPNL+G+FGRKTGQAP F YT ANK KGI WG
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFSYTDANKNKGITWG 60
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
TL EYLENPKKYIPGTKM+FAG+KK ERADLIAYL+K+TKE
Sbjct: 61 EATLMEYLENPKKYIPGTKMIFAGIKKSAERADLIAYLKKATKE 104
>sp|P00018|CYC_DRONO Cytochrome c
Length = 104
Score = 186 bits (471), Expect = 2e-47
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GDI+KGKKIFVQKCSQCHTVEKGGKHKTGPNLNG+FGRKTGQA F YT ANK KGI WG
Sbjct: 1 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGLFGRKTGQAEGFSYTDANKNKGITWG 60
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
DTL EYLENPKKYIPGTKM+FAG+KK++ERADLIAYL+ +T +
Sbjct: 61 EDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATSK 104
>sp|P00008|CYC_RABIT Cytochrome c
Length = 104
Score = 186 bits (471), Expect = 2e-47
Identities = 84/104 (80%), Positives = 95/104 (91%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKKIFVQKC+QCHTVEKGGKHKTGPNL+G+FGRKTGQA F YT ANK KGI WG
Sbjct: 1 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWG 60
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
DTL EYLENPKKYIPGTKM+FAG+KK++ERADLIAYL+K+T E
Sbjct: 61 EDTLMEYLENPKKYIPGTKMIFAGIKKKDERADLIAYLKKATNE 104
>sp|P62897|CYC_MOUSE Cytochrome c, somatic
sp|P62898|CYC_RAT Cytochrome c, somatic
Length = 105
Score = 186 bits (471), Expect = 2e-47
Identities = 84/104 (80%), Positives = 94/104 (90%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKKIFVQKC+QCHTVEKGGKHKTGPNL+G+FGRKTGQA F YT ANK KGI WG
Sbjct: 2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWG 61
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
DTL EYLENPKKYIPGTKM+FAG+KK+ ERADLIAYL+K+T E
Sbjct: 62 EDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKATNE 105
>sp|P00028|CYC_LAMTR Cytochrome c
Length = 104
Score = 185 bits (470), Expect = 3e-47
Identities = 83/104 (79%), Positives = 93/104 (89%)
Frame = +2
Query: 14 GDIDKGKKIFVQKCSQCHTVEKGGKHKTGPNLNGIFGRKTGQAPNFDYTTANKKKGIIWG 193
GD++KGKK+FVQKCSQCHTVEK GKHKTGPNL+G+FGRKTGQAP F YT ANK KGI+W
Sbjct: 1 GDVEKGKKVFVQKCSQCHTVEKAGKHKTGPNLSGLFGRKTGQAPGFSYTDANKSKGIVWN 60
Query: 194 VDTLFEYLENPKKYIPGTKMVFAGMKKENERADLIAYLEKSTKE 325
+TLF YLENPKKYIPGTKM+FAG+KKE ER DLIAYL+KST E
Sbjct: 61 QETLFVYLENPKKYIPGTKMIFAGIKKEGERKDLIAYLKKSTSE 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,285,242
Number of Sequences: 369166
Number of extensions: 1032637
Number of successful extensions: 2926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2904
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)