Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J07
(941 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial prec... 309 8e-84
sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial prec... 308 1e-83
sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial prec... 308 2e-83
sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial precur... 307 2e-83
sp|P93033|FUM1_ARATH Fumarate hydratase 1, mitochondrial pr... 307 3e-83
sp|Q9FI53|FUM2_ARATH Fumarate hydratase 2, chloroplast prec... 307 3e-83
sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial prec... 303 5e-82
sp|Q9ZCQ4|FUMC_RICPR Fumarate hydratase class II (Fumarase C) 303 6e-82
sp|Q92GW0|FUMC_RICCN Fumarate hydratase class II (Fumarase C) 302 1e-81
sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial (Fumar... 301 1e-81
>sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial precursor (Fumarase)
Length = 510
Score = 309 bits (791), Expect = 8e-84
Identities = 157/294 (53%), Positives = 204/294 (69%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EFA++IKIGRTH QDAVPLT+GQE S Y+ Q+ Y + RI ++ +LA
Sbjct: 224 EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAVTRIKAAMP-RIYELAAGGTAVGTG 282
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
F +V ++ F A NKF L AHD+L+ ++G +NT A SLM
Sbjct: 283 LNTRIGFAEKVAAKVAALTG------LPFVTAPNKFEALAAHDALVELSGAMNTTACSLM 336
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND RFLGSGPR G+GE +LPENEPGSSIMPGK+NPTQCE+M+MV AQVMGN+VA+++
Sbjct: 337 KIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTV 396
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
G S G+ ELNV+KP++I N+LHS +LL D S F + CV G+ NT +IN +N+SLMLV
Sbjct: 397 GGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLV 456
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISPK 887
TALN HIGYDK+A+IAK AHKN +LKE A++L ++ E FD+W+ P M+ PK
Sbjct: 457 TALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 510
>sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial precursor (Fumarase)
Length = 510
Score = 308 bits (789), Expect = 1e-83
Identities = 157/294 (53%), Positives = 204/294 (69%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EFA++IKIGRTH QDAVPLT+GQE S Y+ Q+ Y + RI ++ +LA
Sbjct: 224 EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMP-RIYELAAGGTAVGTG 282
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
F +V ++ F A NKF L AHD+L+ ++G +NT A SLM
Sbjct: 283 LNTRIGFAEKVAAKVAALTG------LPFVTAPNKFEALAAHDALVELSGAMNTTACSLM 336
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND RFLGSGPR G+GE +LPENEPGSSIMPGK+NPTQCE+M+MV AQVMGN+VA+++
Sbjct: 337 KIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTV 396
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
G S G+ ELNV+KP++I N+LHS +LL D S F + CV G+ NT +IN +N+SLMLV
Sbjct: 397 GGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLV 456
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISPK 887
TALN HIGYDK+A+IAK AHKN +LKE A++L ++ E FD+W+ P M+ PK
Sbjct: 457 TALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 510
>sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial precursor (Fumarase) (EF-3)
Length = 507
Score = 308 bits (788), Expect = 2e-83
Identities = 158/294 (53%), Positives = 204/294 (69%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EFA+VIKIGRTH QDAVPLT+GQE S Y+ Q+ Y + RI ++ +LA
Sbjct: 221 EFAQVIKIGRTHTQDAVPLTLGQEFSGYVQQVQYAMVRIKAAMP-RIYELAAGGTAVGTG 279
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
F +V ++ F A NKF L AHD+L+ ++G +NT A SLM
Sbjct: 280 LNTRIGFAEKVAAKVAALTG------LPFVTAPNKFEALAAHDALVELSGAMNTAACSLM 333
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND RFLGSGPR G+GE +LPENEPGSSIMPGK+NPTQCE+M+MV AQVMGN+VA+++
Sbjct: 334 KIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTV 393
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
G S G+ ELNV+KP++I N+LHS +LL D S F + CV G+ NT +IN +N+SLMLV
Sbjct: 394 GGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLV 453
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISPK 887
TALN HIGYDK+A+IAK AHKN +LKE A++L ++ E FD+W+ P M+ PK
Sbjct: 454 TALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDMLGPK 507
>sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial precursor (Fumarase)
Length = 507
Score = 307 bits (787), Expect = 2e-83
Identities = 157/294 (53%), Positives = 204/294 (69%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EFA+VIKIGRTH QDAVPLT+GQE S Y+ Q+ Y + RI ++ +LA
Sbjct: 221 EFAQVIKIGRTHTQDAVPLTLGQEFSGYVQQVQYAMERIKAAMP-RIYELAAGGTAVGTG 279
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
F +V ++ F A NKF L AHD+L+ ++G +NT A SLM
Sbjct: 280 LNTRIGFAEKVAAKVAALTG------LPFVTAPNKFEALAAHDALVELSGAMNTTACSLM 333
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND RFLGSGPR G+GE +LPENEPGSSIMPGK+NPTQCE+M+MV AQVMGN+VA+++
Sbjct: 334 KIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTV 393
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
G S G+ ELNV+KP++I N+LHS +LL D S F + CV G+ NT +IN +N+SLMLV
Sbjct: 394 GGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLV 453
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISPK 887
TALN HIGYDK+A+IAK AHKN +LK+ A++L ++ E FD+W+ P M+ PK
Sbjct: 454 TALNPHIGYDKAAKIAKTAHKNGSTLKKTAIELGYLTAEQFDEWVKPKDMLGPK 507
>sp|P93033|FUM1_ARATH Fumarate hydratase 1, mitochondrial precursor (Fumarase 1)
Length = 492
Score = 307 bits (786), Expect = 3e-83
Identities = 153/293 (52%), Positives = 204/293 (69%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EF ++KIGRTH QDA PLT+GQE Y +Q+ Y +NR++ ++ QLA
Sbjct: 205 EFKDIVKIGRTHTQDATPLTLGQEFGGYATQVKYGLNRVTCTLP-RLYQLAQGGTAVGTG 263
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
FDV++ + E F A+NKF L AHD+ + +G LNT+ATSLM
Sbjct: 264 LNTKKGFDVKIAAAVAEETN------LPFVTAENKFEALAAHDACVETSGSLNTIATSLM 317
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND RFLGSGPRCG+GE +LPENEPGSSIMPGK+NPTQCE+++MVCAQVMGN+VA+++
Sbjct: 318 KIANDIRFLGSGPRCGLGELVLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTV 377
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
G S G+ ELNV+KP+I + LLHS++L+AD S F K CV G+ N +I+ +++SLMLV
Sbjct: 378 GGSNGHFELNVFKPVIASALLHSVRLIADASASFEKNCVRGIEANRERISKLLHESLMLV 437
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISP 884
T+LN IGYD +A +AK AHK C+LKEAA+ L +++ E+FD + P KMI P
Sbjct: 438 TSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIGP 490
>sp|Q9FI53|FUM2_ARATH Fumarate hydratase 2, chloroplast precursor (Fumarase 2)
Length = 499
Score = 307 bits (786), Expect = 3e-83
Identities = 154/293 (52%), Positives = 204/293 (69%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EF ++KIGRTH QDA PLT+GQE Y +Q++Y +NR++ ++ QLA
Sbjct: 212 EFKDIVKIGRTHTQDATPLTLGQEFGGYATQVEYGLNRVACTLP-RIYQLAQGGTAVGTG 270
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
FDV++ + E F A+NKF L AHD+ + +G LNT+ATSLM
Sbjct: 271 LNTKKGFDVKIAAAVAEETN------LPFVTAENKFEALAAHDACVETSGSLNTIATSLM 324
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND RFLGSGPRCG+GE LPENEPGSSIMPGK+NPTQCE+++MVCAQVMGN+VA++I
Sbjct: 325 KIANDIRFLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAVTI 384
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
G S G+ ELNV+KP+I + LLHSI+L+AD S F K CV G+ N +I+ +++SLMLV
Sbjct: 385 GGSNGHFELNVFKPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKLLHESLMLV 444
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISP 884
T+LN IGYD +A +AK AHK C+LK AA++L +++ E+FD + P KMI P
Sbjct: 445 TSLNPKIGYDNAAAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIGP 497
>sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial precursor (Fumarase)
Length = 494
Score = 303 bits (776), Expect = 5e-82
Identities = 158/294 (53%), Positives = 198/294 (67%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EF +IKIGRTH+QDA PLT+GQE S Y QL Y I R+ +++ LA
Sbjct: 207 EFEHIIKIGRTHLQDATPLTLGQEFSGYTQQLTYGIARVQGTLE-RLYNLAQGGTAVGTG 265
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
FD +V + I F A NKF L AHD+L+ G LNT+A SLM
Sbjct: 266 LNTRKGFDAKVAEAIASITG------LPFKTAPNKFEALAAHDALVEAHGALNTVACSLM 319
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND R+LGSGPRCG+GE LPENEPGSSIMPGK+NPTQCE+M+MVCAQVMGN AIS+
Sbjct: 320 KIANDIRYLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEAMTMVCAQVMGNNTAISV 379
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
S G ELNV+KP++I NL+ SI+L++D S F K CV G+ N +I++ +N+SLMLV
Sbjct: 380 AGSNGQFELNVFKPVMIKNLIQSIRLISDASISFTKNCVVGIEANEKKISSIMNESLMLV 439
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISPK 887
TALN HIGYDK+A+ AK AHK +LKEAA+ L ++ E+FD+W+ P MIS K
Sbjct: 440 TALNPHIGYDKAAKCAKKAHKEGTTLKEAALSLGYLTSEEFDQWVRPEDMISAK 493
>sp|Q9ZCQ4|FUMC_RICPR Fumarate hydratase class II (Fumarase C)
Length = 461
Score = 303 bits (775), Expect = 6e-82
Identities = 158/292 (54%), Positives = 206/292 (70%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
++ K+IKIGRTH+QDA PLT+ QE S YI+Q++Y + RI +++K LA
Sbjct: 177 DWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALK-KVYLLAQGGTAVGTG 235
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
FD++ Q++ E ++ F A NKF L AHD+L+ +G LNT+A SLM
Sbjct: 236 INSKIGFDIKFAQKVAEFTQQ------PFKTAPNKFESLAAHDALVEFSGTLNTIAVSLM 289
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND R LGSGPRCG+GE LPENEPGSSIMPGK+NPTQ E+++MVC QVMGN+V ++I
Sbjct: 290 KIANDIRLLGSGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTI 349
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
S G+LELNV+KP+II N+L SI+LL+D FV +CV GL N A+INT ++SLMLV
Sbjct: 350 AGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLV 409
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMIS 881
T LN HIGYD +A+IAK AHK +LKEAA +L +S+E+FDK + P KMIS
Sbjct: 410 TVLNPHIGYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPEKMIS 461
>sp|Q92GW0|FUMC_RICCN Fumarate hydratase class II (Fumarase C)
Length = 463
Score = 302 bits (773), Expect = 1e-81
Identities = 157/292 (53%), Positives = 207/292 (70%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
++ K+IKIGRTH+QDA PLT+ QE S YI+Q++Y + RI N+++ LA
Sbjct: 177 DWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIENALQ-KVYLLAQGGTAVGTG 235
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
FD++ +++ E K+ F A NKF L AHD+L+ +G LNT+A SLM
Sbjct: 236 INSKIGFDIKFAEKVAEFTKQ------PFKTAPNKFESLAAHDALVEFSGTLNTIAVSLM 289
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND R LGSGPRCG+GE LPENEPGSSIMPGK+NPTQ E+++MVC+QVMGN+V ++I
Sbjct: 290 KIANDIRLLGSGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCSQVMGNHVTVTI 349
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
S G+LELNV+KP+II N+L SI+LL+D FV +CV GL N A+IN ++SLMLV
Sbjct: 350 AGSNGHLELNVFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINDLRDKSLMLV 409
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMIS 881
TALN HIGYD +A+IAK AHK+ +LKEAA +L L+S+ FDK + P KM+S
Sbjct: 410 TALNPHIGYDNAAKIAKEAHKHGITLKEAAKKLNLLSEAKFDKIVVPEKMVS 461
>sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial (Fumarase)
Length = 466
Score = 301 bits (772), Expect = 1e-81
Identities = 155/294 (52%), Positives = 201/294 (68%)
Frame = +3
Query: 6 EFAKVIKIGRTHMQDAVPLTVGQELSSYISQLDYNINRISNSVKIAAKQLAIXXXXXXXX 185
EFA++IKIGRTH QDAVPLT+GQE S Y+ Q+ Y I RI ++ +LA
Sbjct: 180 EFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAITRIKAAMP-RIYELAAGGTAVGTG 238
Query: 186 XXXXXXFDVEVCQRIKENVKKYLNVEADFGPAQNKFSVLGAHDSLMSVAGDLNTLATSLM 365
F +V ++ F A N F L AHD+L+ +G +NT A SLM
Sbjct: 239 LNTRIGFAEKVAAKVAALTG------LPFVTAPNNFEALAAHDALVEHSGAMNTTACSLM 292
Query: 366 KIANDFRFLGSGPRCGVGEFLLPENEPGSSIMPGKINPTQCESMSMVCAQVMGNYVAISI 545
KIAND RFLGSGPR G+GE +LPENEPGSSIMPGK+NPTQCE+++MV AQVMGN+VA+++
Sbjct: 293 KIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEALTMVAAQVMGNHVAVTV 352
Query: 546 GSSQGNLELNVYKPLIINNLLHSIQLLADCSKCFVKYCVSGLTLNTAQINTYVNQSLMLV 725
G S G+ ELNV+KP++I N+LHS +LL D + F + CV G+ NT +IN +N+SLMLV
Sbjct: 353 GGSNGHFELNVFKPMMIKNVLHSARLLGDAAVSFTENCVVGIQANTERINKLMNESLMLV 412
Query: 726 TALNSHIGYDKSAQIAKYAHKNNCSLKEAAVQLKLVSDEDFDKWLDPWKMISPK 887
TALN HIGYDK+A+IAK AHKN +LK AV+L ++ E FD+W+ P M+ PK
Sbjct: 413 TALNPHIGYDKAAKIAKTAHKNGSTLKATAVELGYLTAEQFDEWVKPRDMLGPK 466
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,253,567
Number of Sequences: 369166
Number of extensions: 2102154
Number of successful extensions: 5910
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5792
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)