Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_J05
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 338 8e-93
sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic 338 8e-93
sp|P92176|ACT2_LUMTE Actin-2 337 1e-92
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 337 1e-92
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 337 1e-92
sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic 337 1e-92
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 337 1e-92
sp|P53461|ACTC_HALRO Actin, nonmuscle 337 2e-92
sp|P12716|ACTC_PISOC Actin, cytoplasmic 337 2e-92
sp|P10984|ACT2_CAEEL Actin-2 336 2e-92
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 338 bits (866), Expect = 8e-93
Identities = 167/194 (86%), Positives = 176/194 (90%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|Q964E3|ACTC_BIOAL Actin, cytoplasmic
Length = 376
Score = 338 bits (866), Expect = 8e-93
Identities = 167/194 (86%), Positives = 176/194 (90%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|P92176|ACT2_LUMTE Actin-2
Length = 376
Score = 337 bits (865), Expect = 1e-92
Identities = 167/194 (86%), Positives = 177/194 (91%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN+PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 337 bits (865), Expect = 1e-92
Identities = 167/194 (86%), Positives = 176/194 (90%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 337 bits (865), Expect = 1e-92
Identities = 167/194 (86%), Positives = 176/194 (90%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|Q964E2|ACTC_BIOPF Actin, cytoplasmic
Length = 376
Score = 337 bits (865), Expect = 1e-92
Identities = 167/194 (86%), Positives = 176/194 (90%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 337 bits (864), Expect = 1e-92
Identities = 167/194 (86%), Positives = 176/194 (90%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVIDSGDGVTHTVPIYEGYALPHAIMRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|P53461|ACTC_HALRO Actin, nonmuscle
Length = 376
Score = 337 bits (863), Expect = 2e-92
Identities = 166/194 (85%), Positives = 177/194 (91%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV+DSGDGV+HTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|P12716|ACTC_PISOC Actin, cytoplasmic
Length = 376
Score = 337 bits (863), Expect = 2e-92
Identities = 166/194 (85%), Positives = 177/194 (91%)
Frame = +2
Query: 8 QDVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKR 187
+DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKR
Sbjct: 4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
Query: 188 GILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQI 367
GILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQI
Sbjct: 64 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 368 MFETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAG 547
MFETFN PAMYVAIQAVLSLYASGRT IV+DSGDGV+HTV I + YAL HAI RL LAG
Sbjct: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPIYEGYALPHAILRLDLAG 183
Query: 548 RDLTDYLMKILTER 589
RDLTDYLMKILTER
Sbjct: 184 RDLTDYLMKILTER 197
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 336 bits (862), Expect = 2e-92
Identities = 167/193 (86%), Positives = 175/193 (90%)
Frame = +2
Query: 11 DVAALVVENGSGRCKGGFAGDDAPRAVFPSFVGRPRHPGVRVGVGQKERYVGDEAQSKRG 190
DVAALVV+NGSG CK GFAGDDAPRAVFPS VGRPRH GV VG+GQK+ YVGDEAQSKRG
Sbjct: 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 64
Query: 191 ILTLKYPIEHGIVTNWDDMEKIWNHTFYHELRVAPEEHPVLLTDTPLNPHADREKMTQIM 370
ILTLKYPIEHGIVTNWDDMEKIW+HTFY+ELRVAPEEHPVLLT+ PLNP A+REKMTQIM
Sbjct: 65 ILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM 124
Query: 371 FETFNAPAMYVAIQAVLSLYASGRTCVIVWDSGDGVTHTVSICDCYALSHAISRLYLAGR 550
FETFN PAMYVAIQAVLSLYASGRT IV DSGDGVTHTV I + YAL HAI RL LAGR
Sbjct: 125 FETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGR 184
Query: 551 DLTDYLMKILTER 589
DLTDYLMKILTER
Sbjct: 185 DLTDYLMKILTER 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,767,416
Number of Sequences: 369166
Number of extensions: 1600896
Number of successful extensions: 5694
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5614
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)