Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_I14
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b56... 38 0.008
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b56... 35 0.054
sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b55... 35 0.071
sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b56... 34 0.093
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b56... 34 0.093
sp|P33421|SDH3_YEAST Succinate dehydrogenase cytochrome B s... 34 0.12
sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b55... 34 0.12
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b56... 33 0.16
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b56... 33 0.21
sp|Q04487|YM07_YEAST Putative succinate dehydrogenase cytoc... 33 0.27
>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
(Succinate-ubiquinone oxidoreductase cytochrome B large
subunit) (CYBL)
Length = 169
Score = 37.7 bits (86), Expect = 0.008
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 109
+H NG+RHL +D KG IP ++G + L L+V+
Sbjct: 126 YHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVL 161
>sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 184
Score = 35.0 bits (79), Expect = 0.054
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFD-IPTTMRTGYIALALSVVIA 115
FH NG+R L +D AKG D I ++G++ +S VIA
Sbjct: 128 FHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIA 166
>sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 34.7 bits (78), Expect = 0.071
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 121
+H NG+RHL +D GF I TG+ + S+++ L
Sbjct: 82 YHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTML 121
>sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 34.3 bits (77), Expect = 0.093
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 109
+H NG+RHL +D KG IP +G + L+V+
Sbjct: 126 YHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVL 161
>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 34.3 bits (77), Expect = 0.093
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFASI 133
+H NG+RHL +D KG I ++G L L+V+ + A++
Sbjct: 126 YHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSSVGLAAM 169
>sp|P33421|SDH3_YEAST Succinate dehydrogenase cytochrome B subunit, mitochondrial
precursor
Length = 198
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 5 HYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFASI 133
HY +RHL +D AK + RTGY + + V+ T ++
Sbjct: 156 HYGGAIRHLIWDTAKELTLKGVYRTGYALIGFTAVLGTYLLTL 198
>sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 33.9 bits (76), Expect = 0.12
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATL 121
+H NG+RHL +D GF I TG+ + SV++ L
Sbjct: 82 YHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGSVLLTVL 121
>sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 182
Score = 33.5 bits (75), Expect = 0.16
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGF-DIPTTMRTGYIALALSVVIA 115
FH NG+R L +D AKG ++ ++GY+ LS ++A
Sbjct: 128 FHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAILA 166
>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
Length = 169
Score = 33.1 bits (74), Expect = 0.21
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIATLFASI 133
+H NG+RHL +D KG I ++G L L+V+ + A++
Sbjct: 126 YHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSSVGLAAM 169
>sp|Q04487|YM07_YEAST Putative succinate dehydrogenase cytochrome B subunit,
mitochondrial precursor
Length = 196
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 2 FHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIAT 118
FH+ NG+RHL +D ++TG I LA ++V+ T
Sbjct: 153 FHFGNGIRHLIWDMGYELTNRGVIKTGSIVLAGTLVLGT 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,242,212
Number of Sequences: 369166
Number of extensions: 426616
Number of successful extensions: 1080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)