Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_I09
(833 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 263 6e-70
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 259 6e-69
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 258 1e-68
sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathe... 254 2e-67
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 252 1e-66
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 244 2e-64
sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted pr... 244 2e-64
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 243 6e-64
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 237 3e-62
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 236 4e-62
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 263 bits (671), Expect = 6e-70
Identities = 135/278 (48%), Positives = 175/278 (62%), Gaps = 1/278 (0%)
Frame = +3
Query: 3 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 182
L+L+ + I + KF N L+ +W +K T R Y + RR +WE+N+K I+ H
Sbjct: 5 LVLAAFCLGIASAVPKFDQN--LDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELH 62
Query: 183 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 362
N EY GKH +++ +N F DMTNEEF+ + +G + + +G + P + LP SVDW
Sbjct: 63 NGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFLD-LPKSVDW 120
Query: 363 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 542
R+KGYVTPVKNQ+QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 121 RKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 543 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAV 719
M AF+Y+K+ G++SE YPY A D CK P V TGFT + E L AV
Sbjct: 181 GFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAV 240
Query: 720 ATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
ATVGP+SVA+DAGH+SFQ YKS IY E CS+ LDHG
Sbjct: 241 ATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHG 278
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 259 bits (662), Expect = 6e-69
Identities = 138/279 (49%), Positives = 171/279 (61%), Gaps = 2/279 (0%)
Frame = +3
Query: 3 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 182
L L+ + + I + KF + LN +W +K T R Y + RR +WE+N+K I+ H
Sbjct: 5 LFLTALCLGIASAAPKF--DQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELH 62
Query: 183 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 362
N EY GKH +++ +N F DMTNEEF+ G K +G + P +P SVDW
Sbjct: 63 NREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKMFQEPL-FAEIPKSVDW 120
Query: 363 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 542
R+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNG 180
Query: 543 XLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANA 716
LMDNAFRY+KD G++SE YPY D TC P TGF D+ Q E L A
Sbjct: 181 GLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECSAANDTGFVDL-PQREKALMKA 239
Query: 717 VATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
VAT+GP+SVAIDAGH SFQ YKS IY + CS+ LDHG
Sbjct: 240 VATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHG 278
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 258 bits (659), Expect = 1e-68
Identities = 138/278 (49%), Positives = 171/278 (61%), Gaps = 1/278 (0%)
Frame = +3
Query: 3 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 182
LIL+ + I + F + L +W +K R Y + RR +WE+N+K I+ H
Sbjct: 5 LILAAFCLGIASATLTF--DHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELH 62
Query: 183 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 362
N EY GKH++++ +N F DMT+EEF+ G KP +G + P P SVDW
Sbjct: 63 NQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR-KGKVFQEPLFYEA-PRSVDW 120
Query: 363 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 542
R+KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK RLIS SEQ LVDCS
Sbjct: 121 REKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNG 180
Query: 543 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAV 719
LMD AF+Y++D G++SE YPY AT+ +CK NP V TGF DI Q E L AV
Sbjct: 181 GLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQ-EKALMKAV 239
Query: 720 ATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
ATVGP+SVAIDAGH SF YK IY E CS+ +DHG
Sbjct: 240 ATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHG 277
>sp|P25975|CATL_BOVIN Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 254 bits (649), Expect = 2e-67
Identities = 138/277 (49%), Positives = 167/277 (60%), Gaps = 2/277 (0%)
Frame = +3
Query: 9 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 188
L+++ + + + K N L+ W +K T R Y + RR +WE+N K I HN
Sbjct: 7 LTVLCLGVASAAPKLDPN--LDAHWHQWKATHRRLYGMNEEEWRRAVWEKNKKIIDLHNQ 64
Query: 189 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 368
EY GKH + + +N F DMTNEEF+ G K +G + P + V P SVDW +
Sbjct: 65 EYSEGKHAFRMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKLFHEPLLVDV-PKSVDWTK 122
Query: 369 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 548
KGYVTPVKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS L
Sbjct: 123 KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGL 182
Query: 549 MDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANAVA 722
MDNAF+YIKD G++SE YPY ATD +C P TGF DI Q E L AVA
Sbjct: 183 MDNAFQYIKDNGGLDSEESYPYLATDTNSCNYKPECSAANDTGFVDI-PQREKALMKAVA 241
Query: 723 TVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
TVGP+SVAIDAGH SFQ YKS IY + CS LDHG
Sbjct: 242 TVGPISVAIDAGHTSFQFYKSGIYYDPDCSCKDLDHG 278
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 252 bits (643), Expect = 1e-66
Identities = 136/279 (48%), Positives = 171/279 (61%), Gaps = 2/279 (0%)
Frame = +3
Query: 3 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 182
L L+ + + I + K N L+ +W +K T GR Y + RR +WE+N+K I+ H
Sbjct: 5 LFLTALCLGIASAAPKLDQN--LDADWYKWKATHGRLYGMNEEGWRRAVWEKNMKMIELH 62
Query: 183 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 362
N EY GKH +S+ +N F DMTNEEF+ G K +G + + V P SVDW
Sbjct: 63 NQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKHK-KGKVFHESLVLEV-PKSVDW 120
Query: 363 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 542
R+KGYVT VKNQ QCGSCW+FSATG+LEGQ FRK +L+S SEQ LVDCS
Sbjct: 121 REKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNG 180
Query: 543 XLMDNAFRYIKDQ-GIESEGDYPYTATD-GTCKRNPSKIVTKCTGFTDIQSQNETDLANA 716
LMDNAF+Y+KD G+++E YPY + +C P TGF DI Q E L A
Sbjct: 181 GLMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECSAANDTGFVDI-PQREKALMKA 239
Query: 717 VATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
VATVGP+SVAIDAGH+SFQ YKS IY + CS+ LDHG
Sbjct: 240 VATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHG 278
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 244 bits (624), Expect = 2e-64
Identities = 134/278 (48%), Positives = 169/278 (60%), Gaps = 1/278 (0%)
Frame = +3
Query: 3 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 182
L+L+++ + KF + + EW +K+T R Y + RR IWE+N++ IQ H
Sbjct: 5 LLLAVLCLGTALATPKF--DQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLH 62
Query: 183 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 362
N EY G+H +S+ +N F DMTNEEF+ G K +G + P + + P SVDW
Sbjct: 63 NGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKHK-KGRLFQEPLMLKI-PKSVDW 120
Query: 363 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 542
R+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 121 REKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNG 180
Query: 543 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAV 719
LMD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L AV
Sbjct: 181 GLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDI-PQQEKALMKAV 239
Query: 720 ATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
ATVGP+SVA+DA H S Q Y S IY E +CS+ LDHG
Sbjct: 240 ATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHG 277
>sp|P07154|CATL_RAT Cathepsin L precursor (Major excreted protein) (MEP) (Cyclic
protein 2) (CP-2) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 244 bits (623), Expect = 2e-64
Identities = 132/278 (47%), Positives = 169/278 (60%), Gaps = 1/278 (0%)
Frame = +3
Query: 3 LILSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKH 182
L+L+++ + KF + N +W +K+T R Y + RR +WE+N++ IQ H
Sbjct: 5 LLLAVLCLGTALATPKF--DQTFNAQWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQLH 62
Query: 183 NLEYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDW 362
N EY GKH +++ +N F DMTNEEF+ G K +G + P + + P +VDW
Sbjct: 63 NGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHK-KGRLFQEPLMLQI-PKTVDW 120
Query: 363 RQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXX 542
R+KG VTPVKNQ QCGSCW+FSA+G LEGQ F K +LIS SEQ LVDCS
Sbjct: 121 REKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNG 180
Query: 543 XLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAV 719
LMD AF+YIK+ G++SE YPY A DG+CK V TGF DI Q E L AV
Sbjct: 181 GLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDI-PQQEKALMKAV 239
Query: 720 ATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
ATVGP+SVA+DA H S Q Y S IY E +CS+ LDHG
Sbjct: 240 ATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHG 277
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 243 bits (619), Expect = 6e-64
Identities = 132/282 (46%), Positives = 171/282 (60%), Gaps = 9/282 (3%)
Frame = +3
Query: 15 LVVVAITAVPQKFSVNSELNEEWETYKTTFGRKY-DELTDITRRLIWEQNLKYIQKHNLE 191
+ ++A+ A+ Q S + EEW TYK + Y +E+ + R I+ +N I KHN
Sbjct: 6 VALLALVALTQAISPLDLIKEEWHTYKLQHRKNYANEVEERFRMKIFNENRHKIAKHNQL 65
Query: 192 YDLGKHTYSLGLNQFADMTNEEFKAKYLG-------IMKTKPTLEGSTYMAPENIGVLPA 350
+ GK +Y LGLN++ADM + EFK G +M+ + L G+TY+ P ++ V P
Sbjct: 66 FAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHVTV-PK 124
Query: 351 SVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXX 530
SVDWR+ G VT VK+Q CGSCW+FS+TG+LEGQ+FRK L+S SEQ LVDCS
Sbjct: 125 SVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTKYGNN 184
Query: 531 XXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDL 707
LMDNAFRYIKD GI++E YPY D +C N + I TGF DI +E +
Sbjct: 185 GCNGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKM 244
Query: 708 ANAVATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
AVAT+GPVSVAIDA H SFQLY +YNE C LDHG
Sbjct: 245 KKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHG 286
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 237 bits (604), Expect = 3e-62
Identities = 118/274 (43%), Positives = 166/274 (60%)
Frame = +3
Query: 9 LSLVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRLIWEQNLKYIQKHNL 188
+ L ++A+ V V ++ W +K + ++Y+ D RR IWE+N+K+IQ+HNL
Sbjct: 1 MRLFILAVLTV----GVLGSNDDLWHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNL 56
Query: 189 EYDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKTKPTLEGSTYMAPENIGVLPASVDWRQ 368
+DLG TY+LGLNQF DMT EEFKAKYL M + N +P +DWR+
Sbjct: 57 RHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAVPDKIDWRE 116
Query: 369 KGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXXXXXXXXL 548
GYVT VK+Q CGSCW+FS TG++EGQY + ISFSEQQLVDCS L
Sbjct: 117 SGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGL 176
Query: 549 MDNAFRYIKDQGIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETDLANAVATV 728
M+NA++Y+K G+E+E YPYTA +G C+ N V K TG+ + S +E +L N V
Sbjct: 177 MENAYQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGAR 236
Query: 729 GPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDH 830
P +VA+D + F +Y+S IY ++CS +++H
Sbjct: 237 RPAAVAVDV-ESDFMMYRSGIYQSQTCSPLRVNH 269
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 236 bits (603), Expect = 4e-62
Identities = 129/283 (45%), Positives = 169/283 (59%), Gaps = 10/283 (3%)
Frame = +3
Query: 15 LVVVAITAVPQKFSVNSELNEEWETYKTTFGRKYDELTDITRRL-IWEQNLKYIQKHNLE 191
L ++A+ AV Q S + EEW T+K + Y + T+ RL I+ +N I KHN
Sbjct: 7 LPLLALLAVAQAVSFADVVMEEWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQR 66
Query: 192 YDLGKHTYSLGLNQFADMTNEEFKAKYLGIMKT--------KPTLEGSTYMAPENIGVLP 347
+ GK ++ L +N++AD+ + EF+ G T + +G T+++P ++ LP
Sbjct: 67 FAEGKVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPAHV-TLP 125
Query: 348 ASVDWRQKGYVTPVKNQQQCGSCWSFSATGSLEGQYFRKNNRLISFSEQQLVDCSXXXXX 527
SVDWR KG VT VK+Q CGSCW+FS+TG+LEGQ+FRK+ L+S SEQ LVDCS
Sbjct: 126 KSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYGN 185
Query: 528 XXXXXXLMDNAFRYIKDQ-GIESEGDYPYTATDGTCKRNPSKIVTKCTGFTDIQSQNETD 704
LMDNAFRYIKD GI++E YPY A D +C N + GFTDI +E
Sbjct: 186 NGCNGGLMDNAFRYIKDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDRGFTDIPQGDEKK 245
Query: 705 LANAVATVGPVSVAIDAGHASFQLYKSRIYNEESCSTTQLDHG 833
+A AVATVGPVSVAIDA H SFQ Y +YNE C LDHG
Sbjct: 246 MAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHG 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,146,112
Number of Sequences: 369166
Number of extensions: 1706277
Number of successful extensions: 4992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4641
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8100769320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)