Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H21
(507 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P97427|DPYL1_MOUSE Dihydropyrimidinase-related protein 1... 62 1e-09
sp|Q62950|DPYL1_RAT Dihydropyrimidinase-related protein 1 (... 62 1e-09
sp|Q9JHU0|DPYL5_RAT Dihydropyrimidinase-related protein 5 (... 61 1e-09
sp|P47942|DPYL2_RAT Dihydropyrimidinase-related protein 2 (... 60 3e-09
sp|Q9BPU6|DPYL5_HUMAN Dihydropyrimidinase-related protein 5... 60 3e-09
sp|Q16555|DPYL2_HUMAN Dihydropyrimidinase-related protein 2... 60 3e-09
sp|Q9EQF6|DPYL5_MOUSE Dihydropyrimidinase-related protein 5... 60 3e-09
sp|O08553|DPYL2_MOUSE Dihydropyrimidinase-related protein 2... 60 3e-09
sp|Q90635|DPYL2_CHICK Dihydropyrimidinase-related protein 2... 60 3e-09
sp|O02675|DPYL2_BOVIN Dihydropyrimidinase-related protein 2... 60 3e-09
>sp|P97427|DPYL1_MOUSE Dihydropyrimidinase-related protein 1 (DRP-1) (Collapsin response
mediator protein 1) (CRMP-1) (ULIP3 protein)
Length = 572
Score = 61.6 bits (148), Expect = 1e-09
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 11 GKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDLSKEMTNLNIDLLDQNDS 190
G+F+P PF +++ +V++R + S V+R YDGPV ++ +
Sbjct: 466 GRFIPRKPFPEHLYQRVRIRSKVFGLHS--VSRGMYDGPVYEVPATPKHAA--------P 515
Query: 191 SENAVSTEFSVNKRPLTSSGGRHMQDSSFALSGAQIDDNRPARSGIRTHQPPGG--NTTS 364
+ +A S+ P+ R++ S+F+LSGAQIDDN P R+G R PPGG N TS
Sbjct: 516 APSAKSSPSKHQPPPI-----RNLHQSNFSLSGAQIDDNNPRRTGHRIVAPPGGRSNITS 570
Query: 365 L 367
L
Sbjct: 571 L 571
>sp|Q62950|DPYL1_RAT Dihydropyrimidinase-related protein 1 (DRP-1) (Collapsin response
mediator protein 1) (CRMP-1)
Length = 572
Score = 61.6 bits (148), Expect = 1e-09
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 11 GKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDLSKEMTNLNIDLLDQNDS 190
G+F+P PF +++ +V++R + S V+R YDGPV ++ +
Sbjct: 466 GRFIPRKPFPEHLYQRVRIRSKVFGLHS--VSRGMYDGPVYEVPATPKHAA--------P 515
Query: 191 SENAVSTEFSVNKRPLTSSGGRHMQDSSFALSGAQIDDNRPARSGIRTHQPPGG--NTTS 364
+ +A S+ P+ R++ S+F+LSGAQIDDN P R+G R PPGG N TS
Sbjct: 516 APSAKSSPSKHQPPPI-----RNLHQSNFSLSGAQIDDNNPRRTGHRIVAPPGGRSNITS 570
Query: 365 L 367
L
Sbjct: 571 L 571
>sp|Q9JHU0|DPYL5_RAT Dihydropyrimidinase-related protein 5 (DRP-5) (ULIP6 protein)
Length = 564
Score = 61.2 bits (147), Expect = 1e-09
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Frame = +2
Query: 11 GKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPV-VDLSKEMTNLNIDLLDQND 187
GKF P F + V+ K+ R++ K + V R PY G V V ++ + L D
Sbjct: 459 GKFCPLRSFPDIVYKKLVQREKTLK--VRGVDRTPYLGDVAVVVNPGKKEMGTPLAD--- 513
Query: 188 SSENAVSTEFSVNKRPLTSSGG-RHMQDSSFALSGAQIDDNRPARSGIRTHQPPGGNTTS 364
RP+T GG R + +SSF+LSG+QIDD+ P R+ R PPGG ++
Sbjct: 514 -----------TPTRPVTRHGGMRDLHESSFSLSGSQIDDHVPKRASARILAPPGGRSSG 562
Query: 365 LW 370
+W
Sbjct: 563 IW 564
>sp|P47942|DPYL2_RAT Dihydropyrimidinase-related protein 2 (DRP-2) (Turned on after
division, 64 kDa protein) (TOAD-64) (Collapsin response
mediator protein 2) (CRMP-2)
Length = 572
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +2
Query: 8 AGKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDLSKEMTNLNIDLLDQND 187
+G+++P PF ++V+ +++ R + + + V R YDGPV ++S + +
Sbjct: 465 SGRYIPRKPFPDFVYKRIKARSRLAE--LRGVPRGLYDGPVCEVS---------VTPKTV 513
Query: 188 SSENAVSTEFSVNKRPLTSSGGRHMQDSSFALSGAQIDDNRPARSGIRTHQPPGG--NTT 361
+ ++ T + + P R++ S F+LSGAQIDDN P R+ R PPGG N T
Sbjct: 514 TPASSAKTSPAKQQAPPV----RNLHQSGFSLSGAQIDDNIPRRTTQRIVAPPGGRANIT 569
Query: 362 SL 367
SL
Sbjct: 570 SL 571
>sp|Q9BPU6|DPYL5_HUMAN Dihydropyrimidinase-related protein 5 (DRP-5) (ULIP6 protein)
(Collapsin response mediator protein 5) (CRMP-5)
(CRMP3-associated molecule) (CRAM)
Length = 564
Score = 60.1 bits (144), Expect = 3e-09
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Frame = +2
Query: 11 GKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPV-VDLSKEMTNLNIDLLDQND 187
GKF P F + V+ K+ R++ K + V R PY G V V + + L D
Sbjct: 459 GKFCPLRSFPDTVYKKLVQREKTLK--VRGVDRTPYLGDVAVVVHPGKKEMGTPLAD--- 513
Query: 188 SSENAVSTEFSVNKRPLTSSGG-RHMQDSSFALSGAQIDDNRPARSGIRTHQPPGGNTTS 364
RP+T GG R + +SSF+LSG+QIDD+ P R+ R PPGG ++
Sbjct: 514 -----------TPTRPVTRHGGMRDLHESSFSLSGSQIDDHVPKRASARILAPPGGRSSG 562
Query: 365 LW 370
+W
Sbjct: 563 IW 564
>sp|Q16555|DPYL2_HUMAN Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin response
mediator protein 2) (CRMP-2) (N2A3)
Length = 572
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +2
Query: 8 AGKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDLSKEMTNLNIDLLDQND 187
+G+++P PF ++V+ +++ R + + + V R YDGPV ++S + +
Sbjct: 465 SGRYIPRKPFPDFVYKRIKARSRLAE--LRGVPRGLYDGPVCEVS---------VTPKTV 513
Query: 188 SSENAVSTEFSVNKRPLTSSGGRHMQDSSFALSGAQIDDNRPARSGIRTHQPPGG--NTT 361
+ ++ T + + P R++ S F+LSGAQIDDN P R+ R PPGG N T
Sbjct: 514 TPASSAKTSPAKQQAPPV----RNLHQSGFSLSGAQIDDNIPRRTTQRIVAPPGGRANIT 569
Query: 362 SL 367
SL
Sbjct: 570 SL 571
>sp|Q9EQF6|DPYL5_MOUSE Dihydropyrimidinase-related protein 5 (DRP-5) (Collapsin response
mediator protein 5) (CRMP-5)
Length = 564
Score = 60.1 bits (144), Expect = 3e-09
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Frame = +2
Query: 11 GKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDL----SKEMTNLNIDLLD 178
GKF P F + V+ K+ R++ K + V R PY G V + KEM D
Sbjct: 459 GKFCPLRSFPDIVYKKLVQREKTLK--VRGVDRTPYLGDVAIVVHPGKKEMGTPLAD--- 513
Query: 179 QNDSSENAVSTEFSVNKRPLTSSGG-RHMQDSSFALSGAQIDDNRPARSGIRTHQPPGGN 355
RP+T GG R + +SSF+LSG+QIDD+ P R+ R PPGG
Sbjct: 514 --------------TPTRPVTRHGGMRDLHESSFSLSGSQIDDHVPKRASARILAPPGGR 559
Query: 356 TTSLW 370
++ +W
Sbjct: 560 SSGIW 564
>sp|O08553|DPYL2_MOUSE Dihydropyrimidinase-related protein 2 (DRP-2) (ULIP 2 protein)
Length = 572
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +2
Query: 8 AGKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDLSKEMTNLNIDLLDQND 187
+G+++P PF ++V+ +++ R + + + V R YDGPV ++S + +
Sbjct: 465 SGRYIPRKPFPDFVYKRIKARSRLAE--LRGVPRGLYDGPVCEVS---------VTPKTV 513
Query: 188 SSENAVSTEFSVNKRPLTSSGGRHMQDSSFALSGAQIDDNRPARSGIRTHQPPGG--NTT 361
+ ++ T + + P R++ S F+LSGAQIDDN P R+ R PPGG N T
Sbjct: 514 TPASSAKTSPAKQQAPPV----RNLHQSGFSLSGAQIDDNIPRRTTQRIVAPPGGRANIT 569
Query: 362 SL 367
SL
Sbjct: 570 SL 571
>sp|Q90635|DPYL2_CHICK Dihydropyrimidinase-related protein 2 (DRP-2) (Collapsin response
mediator protein CRMP-62)
Length = 572
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +2
Query: 8 AGKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDLSKEMTNLNIDLLDQND 187
+G+++P PF ++V+ +++ R + + + V R YDGPV ++S + +
Sbjct: 465 SGRYIPRKPFPDFVYKRIKARSRLAE--LRGVPRGLYDGPVCEVS---------VTPKTV 513
Query: 188 SSENAVSTEFSVNKRPLTSSGGRHMQDSSFALSGAQIDDNRPARSGIRTHQPPGG--NTT 361
+ ++ T + + P R++ S F+LSGAQIDDN P R+ R PPGG N T
Sbjct: 514 TPASSAKTSPAKQQAPPV----RNLHQSGFSLSGAQIDDNIPRRTTQRIVAPPGGRANIT 569
Query: 362 SL 367
SL
Sbjct: 570 SL 571
>sp|O02675|DPYL2_BOVIN Dihydropyrimidinase-related protein 2 (DRP-2) (Neural-specific
protein NSP60)
Length = 572
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +2
Query: 8 AGKFVPTNPFSNYVFSKVQLRDQCQKNISKKVAREPYDGPVVDLSKEMTNLNIDLLDQND 187
+G+++P PF ++V+ +++ R + + + V R YDGPV ++S + +
Sbjct: 465 SGRYIPRKPFPDFVYKRIKARSRLAE--LRGVPRGLYDGPVCEVS---------VTPKTV 513
Query: 188 SSENAVSTEFSVNKRPLTSSGGRHMQDSSFALSGAQIDDNRPARSGIRTHQPPGG--NTT 361
+ ++ T + + P R++ S F+LSGAQIDDN P R+ R PPGG N T
Sbjct: 514 TPASSAKTSPAKQQAPPV----RNLHQSGFSLSGAQIDDNIPRRTTQRIVAPPGGRANIT 569
Query: 362 SL 367
SL
Sbjct: 570 SL 571
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,707,225
Number of Sequences: 369166
Number of extensions: 1097734
Number of successful extensions: 2642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)