Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H20
(459 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein al... 32 0.88
sp|Q04704|V6B_CVCAE Protein 6B 31 1.2
sp|Q37370|COX1_ACACA Cytochrome c oxidase subunit 1+2 (Cyto... 30 3.4
sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial g... 29 4.4
sp|Q01352|VU5_HHV6U U5 protein 29 5.7
sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chai... 29 5.7
sp|Q8RGH4|HTPG_FUSNN Chaperone protein htpG (Heat shock pro... 28 7.5
sp|Q9KV38|COAA_VIBCH Pantothenate kinase (Pantothenic acid ... 28 9.8
sp|Q6F1D3|END4_MESFL Probable endonuclease IV (Endodeoxyrib... 28 9.8
sp|P35588|HYPB_HYPLI Hypodermin B precursor (HB) 28 9.8
>sp|P00467|NIFD_CLOPA Nitrogenase molybdenum-iron protein alpha chain (Nitrogenase
component I) (Dinitrogenase)
Length = 534
Score = 31.6 bits (70), Expect = 0.88
Identities = 24/95 (25%), Positives = 40/95 (42%)
Frame = +1
Query: 61 SRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIQNSTKLVWKWTDGKNLPENAIMGG 240
+R V II CAY G KGV + + + + W K+ PEN G
Sbjct: 41 TRTVPGIITARGCAYAGCKGVVMGPIKDMVHITHGPIGCSFYTWGGRRFKSKPENGT--G 98
Query: 241 HDGDKMLFIGRACVDNQILVGSYNKDKGTVYVPYK 345
+ ++ +F ++ I+ G NK K ++ Y+
Sbjct: 99 LNFNEYVF-STDMQESDIVFGGVNKLKDAIHEAYE 132
>sp|Q04704|V6B_CVCAE Protein 6B
Length = 213
Score = 31.2 bits (69), Expect = 1.2
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 58 GSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIQNST-KLVWKWTDGKNLPENAIM 234
G+ + IEG C++ GYK AY+H +Y + + + K D + ++
Sbjct: 62 GAEIYCDEIEGFPCSWPGYKAYAYNHIDYHFDLSSPFYSFVDKFYISLGDREEKIHLRVV 121
Query: 235 GGHDGDKMLFIG 270
G DK L +G
Sbjct: 122 GATPKDKRLTVG 133
>sp|Q37370|COX1_ACACA Cytochrome c oxidase subunit 1+2 (Cytochrome c oxidase polypeptide
I+II)
Length = 873
Score = 29.6 bits (65), Expect = 3.4
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = -1
Query: 375 ITAFYFEFFAFVWNINGSFIFIVRSN*NLIVNTCSTNE*HFVSIMSTHYCIFR*IFSICP 196
I FY + AF N I +V S +NT S N F SI ST F F
Sbjct: 479 IVFFYLIYLAFNNNNTPKLIKLVHSIFAPYINTLSKNLLTFASIKSTSDSSF---FKFSK 535
Query: 195 FPY*FSAVLN--FCFYENLIFIMRISNSF 115
F F L+ F FY++L+ + +NS+
Sbjct: 536 FFIFFMVSLSVLFIFYDSLLCLNDHTNSW 564
>sp|Q890I8|GLGA_LACPL Glycogen synthase (Starch [bacterial glycogen] synthase)
Length = 479
Score = 29.3 bits (64), Expect = 4.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +1
Query: 88 GENCAYCGYKGVAYSHYEYQIFVETEIQNSTKLVWKWTDG 207
GE+ YCG K + +H +Y + + L W DG
Sbjct: 68 GEHAMYCGIKTLTVAHVQYYLIDNLDYFGREGLYGYWDDG 107
>sp|Q01352|VU5_HHV6U U5 protein
Length = 444
Score = 28.9 bits (63), Expect = 5.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 451 LNSKSDHIFKLFCLNTLIKHQRCIKYHSLLLRILCLCMEHKRFLYLYCKIQLKFDCQH 278
L +KSD F+ + + C+ H +LL C C+E +R +Y K KFD H
Sbjct: 90 LENKSDVFFRYDFFERI---ESCLIEHFMLL---CGCVECRRMFIMYNKRGRKFDFGH 141
>sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit)
Length = 347
Score = 28.9 bits (63), Expect = 5.7
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +1
Query: 25 GRCYIVRVMHEG-SRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIQNSTKLVWK-W 198
G+ Y+ MHEG S +G I + ++ + VAY+ + ++ ++ N KL+ + W
Sbjct: 160 GKGYVPADMHEGLSEEIGLI--KLDASFSPVRKVAYTVEQARV---GQMTNYDKLILEVW 214
Query: 199 TDGKNLPENAI 231
TDG PE+AI
Sbjct: 215 TDGSVSPEDAI 225
>sp|Q8RGH4|HTPG_FUSNN Chaperone protein htpG (Heat shock protein htpG) (High temperature
protein G)
Length = 607
Score = 28.5 bits (62), Expect = 7.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 127 YSHY-EYQIFVETEIQNSTKLVWKWTDGKNLPEN 225
YS+Y Y+I+ E+ NSTK +WK D K L ++
Sbjct: 199 YSNYIRYEIYFGDEVINSTKPIWK-KDKKELKDD 231
>sp|Q9KV38|COAA_VIBCH Pantothenate kinase (Pantothenic acid kinase)
Length = 312
Score = 28.1 bits (61), Expect = 9.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 118 GVAYSHYEYQIFVETEIQNSTKLVWKWTDGKNLPENAI 231
G +SHY E + + + +W+ +GKNL EN +
Sbjct: 252 GSYFSHYT--ALTEAQAEQKARSIWETINGKNLVENIL 287
>sp|Q6F1D3|END4_MESFL Probable endonuclease IV (Endodeoxyribonuclease IV)
Length = 293
Score = 28.1 bits (61), Expect = 9.8
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 40 VRVMHEGSRLVGSIIEGENCAYCGYKGVAYSHYEYQIFVETEIQNSTKLVWKWTDGKNLP 219
+ V+H G+RL G + N G VA S I +ET T++ D K +
Sbjct: 114 ILVLHPGARLKGDYTDALNALVKGLNAVASSQTNVIIALETMAGKGTEVGLSLNDFKYVI 173
Query: 220 EN 225
+N
Sbjct: 174 DN 175
>sp|P35588|HYPB_HYPLI Hypodermin B precursor (HB)
Length = 256
Score = 28.1 bits (61), Expect = 9.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 58 GSRLVGSIIEGENCAYCGYKGV 123
G LVG + GE CAY G+ GV
Sbjct: 217 GEALVGVVSWGEGCAYPGFPGV 238
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,278,606
Number of Sequences: 369166
Number of extensions: 1134522
Number of successful extensions: 2644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2641
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)