Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H19
(931 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CP96|DAPA_STAES Dihydrodipicolinate synthase (DHDPS) 35 0.23
sp|Q8NEE8|TTC16_HUMAN Tetratricopeptide repeat protein 16 (... 34 0.51
sp|Q5HPE7|DAPA_STAEQ Dihydrodipicolinate synthase (DHDPS) 33 1.1
sp|Q95LZ5|TTC16_MACFA Tetratricopeptide repeat protein 16 (... 33 1.5
sp|Q99999|G3ST1_HUMAN Galactosylceramide sulfotransferase (... 32 2.0
sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK ... 32 2.0
sp|P16591|FER_HUMAN Proto-oncogene tyrosine-protein kinase ... 32 2.5
sp|Q6PSE2|MATK_AMPBR Maturase K (Intron maturase) 32 3.3
sp|O15037|K0323_HUMAN Protein KIAA0323 32 3.3
sp|Q80U38|K0323_MOUSE Protein KIAA0323 32 3.3
>sp|Q8CP96|DAPA_STAES Dihydrodipicolinate synthase (DHDPS)
Length = 294
Score = 35.4 bits (80), Expect = 0.23
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Frame = +1
Query: 199 NYFSSVDSQFLLLLNDFSKEAFNILNLKSFYQSKCKVLMSIDSNVL-----YIFGQLYNS 363
+YF V + + N+F+ + N N+ FYQ ++S+ +NV+ Y++ Q N
Sbjct: 170 DYFDQVKQR--INTNEFALYSGNDDNVVKFYQRGGNGVISVIANVIPQEFQYLYDQRQNE 227
Query: 364 TQTYNYFCHYNNLIEKDIDFDFSENKISILN--LMCNELEIKLP 489
T NYF L+E + D + I +L L E++LP
Sbjct: 228 TDITNYFKPIEKLLEA-LSLDVNPIPIKVLTAYLGYGHYEVRLP 270
>sp|Q8NEE8|TTC16_HUMAN Tetratricopeptide repeat protein 16 (TPR repeat protein 16)
Length = 873
Score = 34.3 bits (77), Expect = 0.51
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 487 VILFPTHYTLNLKLISYFPKNQNQYLFLLNYYNGKNNYTSVWNYTIDQKYIKHLNQLTLI 308
V+LF L+ +L+ ++ YL L ++ + N Y++ Q KHL +LT +
Sbjct: 81 VLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRA--YSLQQDNCKHLERLTFV 138
Query: 307 LYI 299
LY+
Sbjct: 139 LYL 141
>sp|Q5HPE7|DAPA_STAEQ Dihydrodipicolinate synthase (DHDPS)
Length = 294
Score = 33.1 bits (74), Expect = 1.1
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Frame = +1
Query: 202 YFSSVDSQFLLLLNDFSKEAFNILNLKSFYQSKCKVLMSIDSNVL-----YIFGQLYNST 366
YF V + + N+F+ + N N+ FYQ ++S+ +NV+ Y++ N T
Sbjct: 171 YFDEVKQR--INANEFALYSGNDDNVVKFYQRGGNGVISVIANVIPQEFQYLYDNRQNET 228
Query: 367 QTYNYFCHYNNLIEKDIDFDFSENKISILN--LMCNELEIKLP 489
NYF L+E + D + I +L L E++LP
Sbjct: 229 DITNYFKPIEKLLEA-LSLDVNPIPIKVLTAYLGYGHYEVRLP 270
>sp|Q95LZ5|TTC16_MACFA Tetratricopeptide repeat protein 16 (TPR repeat protein 16)
Length = 872
Score = 32.7 bits (73), Expect = 1.5
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -1
Query: 487 VILFPTHYTLNLKLISYFPKNQNQYLFLLNYYNGKNNYTSVWNYTIDQKYIKHLNQLTLI 308
V+ F L+ +L+ ++ YL L ++ + N Y++ Q KHL +LT +
Sbjct: 81 VLFFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRA--YSLQQDNCKHLERLTFV 138
Query: 307 LYI 299
LY+
Sbjct: 139 LYL 141
>sp|Q99999|G3ST1_HUMAN Galactosylceramide sulfotransferase (GalCer sulfotransferase)
(Cerebroside sulfotransferase)
(3'-phosphoadenylylsulfate:galactosylceramide
3'-sulfotransferase)
(3'-phosphoadenosine-5'phosphosulfate:GalCer
sulfotransferase)
Length = 423
Score = 32.3 bits (72), Expect = 2.0
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 8/174 (4%)
Frame = +1
Query: 427 FSENKISILNLMCNELEIKLPNEIHTKSKIFIYFILKHRSELFNKFPKLNFE-------- 582
F E+ + + +L+C ELE L YF L R + + P+L+ E
Sbjct: 255 FDESLVLLKDLLCWELEDVL------------YFKLNARRD--SPVPRLSGELYGRATAW 300
Query: 583 NSRDLVLKLETKSEFCGKVSENNQPEEIGKLKLDPLNESVSLTPIIQDSQKKFRTVIIDG 762
N D L + F KV E G+ ++ ++ + ++ RT+ IDG
Sbjct: 301 NMLDSHLYRHFNASFWRKV------EAFGRERM------AREVAALRHANERMRTICIDG 348
Query: 763 GNVAFEFS**I*PKDFSNISRHGSQKFSPIGIKFAIDYFLKRGHTKVYALLSRR 924
G+ D + I Q + P+G K + Y LK+ + +A L RR
Sbjct: 349 GHAV----------DAAAIQDEAMQPWQPLGTKSILGYNLKKSIGQRHAQLCRR 392
>sp|Q6DT37|MRCKG_HUMAN Serine/threonine-protein kinase MRCK gamma (CDC42-binding protein
kinase gamma) (Myotonic dystrophy kinase-related
CDC42-binding kinase gamma) (Myotonic dystrophy protein
kinase-like alpha) (MRCK gamma) (DMPK-like gamma)
Length = 1551
Score = 32.3 bits (72), Expect = 2.0
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Frame = +1
Query: 427 FSENKISILNLMCNE----LEIKLPNEIHTKSKIFIYFILKHR-----SELFNK----FP 567
FSEN I + ++ E + +K ++ + +F+Y K R ++L K P
Sbjct: 1332 FSENSIDVFDVRRAEWVQTVPLKKVRPLNPEGSLFLYGTEKVRLTYLRNQLAEKDEFDIP 1391
Query: 568 KLNFENSRDLVLKLETKSEFCGKVSENNQPEEIGKLKLDPLNESVSLTP 714
L +NSR + + ++K F +VSE Q ++ ++ DP S ++P
Sbjct: 1392 DLT-DNSRRQLFRTKSKRRFFFRVSEEQQKQQRREMLKDPFVRSKLISP 1439
>sp|P16591|FER_HUMAN Proto-oncogene tyrosine-protein kinase FER (p94-FER) (c-FER)
Length = 822
Score = 32.0 bits (71), Expect = 2.5
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 17/178 (9%)
Frame = +1
Query: 163 NQADLALCQEQANYFSSVDSQFLLLLNDFSKEAFNILN-LKSFYQSKCKVLMSIDSNVLY 339
NQ LAL Q + D LLL+ K ++ LK + ++ + ++
Sbjct: 183 NQYVLALKGAQLHQNQYYDITLPLLLDSLQKMQEEMIKALKGIFDEYSQITSLVTEEIVN 242
Query: 340 IFGQLYNSTQTYNYFCHYNNLI---------EKDIDFDFS---ENKISILNLMCNELEIK 483
+ ++ S + + YNN I E++I+FD S EN+ NL NE+
Sbjct: 243 VHKEIQMSVEQIDPSTEYNNFIDVHRTTAAKEQEIEFDTSLLEENE----NLQANEI--- 295
Query: 484 LPNEIHTKSKIFIYFILKHRSELFNKFPKLNFENSRDLVLKLETK----SEFCGKVSE 645
+ N + +S + +LK +E + ++ N + VL+LE + SE C K S+
Sbjct: 296 MWNNLTAES---LQVMLKTLAEELMQTQQM-LLNKEEAVLELEKRIEESSETCEKKSD 349
>sp|Q6PSE2|MATK_AMPBR Maturase K (Intron maturase)
Length = 507
Score = 31.6 bits (70), Expect = 3.3
Identities = 25/94 (26%), Positives = 39/94 (41%)
Frame = +1
Query: 220 SQFLLLLNDFSKEAFNILNLKSFYQSKCKVLMSIDSNVLYIFGQLYNSTQTYNYFCHYNN 399
+ F++ ND +K F N FY + + + +S + YNN
Sbjct: 65 THFIIFANDSNKNPFRGYN-NHFYSQIILEGFVVVVEIRFSLQLFISSLRELEIIKSYNN 123
Query: 400 LIEKDIDFDFSENKISILNLMCNELEIKLPNEIH 501
L F F E+K+ LNL E +I++P IH
Sbjct: 124 LRSIHSIFPFFEDKLIYLNL---ESDIRIPYPIH 154
>sp|O15037|K0323_HUMAN Protein KIAA0323
Length = 678
Score = 31.6 bits (70), Expect = 3.3
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 730 QKKFRTVIIDGGNVAFEFS**I*PKDFSNISRHGSQK-FSPIGIKFAIDYFLKRGHTKV 903
Q R ++IDG NVA HG Q FS GI A+ YF RGH +
Sbjct: 434 QPDLRHIVIDGSNVAMV---------------HGLQHYFSSRGIAIAVQYFWDRGHRDI 477
>sp|Q80U38|K0323_MOUSE Protein KIAA0323
Length = 671
Score = 31.6 bits (70), Expect = 3.3
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +1
Query: 730 QKKFRTVIIDGGNVAFEFS**I*PKDFSNISRHGSQK-FSPIGIKFAIDYFLKRGHTKV 903
Q R ++IDG NVA HG Q FS GI A+ YF RGH +
Sbjct: 427 QPDLRHIVIDGSNVAMV---------------HGLQHYFSSRGIALAVQYFWDRGHRDI 470
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,518,467
Number of Sequences: 369166
Number of extensions: 1537520
Number of successful extensions: 4358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4350
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)