Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_H18
(427 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 134 8e-32
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 120 1e-27
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 119 3e-27
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 116 2e-26
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 116 2e-26
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 115 3e-26
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 115 3e-26
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 115 5e-26
sp|P34728|ARF_CRYNE ADP-ribosylation factor 113 2e-25
sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1 112 4e-25
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 134 bits (337), Expect = 8e-32
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN
Sbjct: 120 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 179
Query: 183 RSKK 194
RSKK
Sbjct: 180 RSKK 183
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 120 bits (301), Expect = 1e-27
Identities = 57/62 (91%), Positives = 58/62 (93%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLLVFANKQDLP AMN AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS LKN
Sbjct: 120 VLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKN 179
Query: 183 RS 188
RS
Sbjct: 180 RS 181
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 119 bits (297), Expect = 3e-27
Identities = 55/63 (87%), Positives = 59/63 (93%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLL+FANKQDLPNAMN AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LKN
Sbjct: 120 VLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
Query: 183 RSK 191
++
Sbjct: 180 ANR 182
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 116 bits (290), Expect = 2e-26
Identities = 54/61 (88%), Positives = 58/61 (95%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
+LLVFANKQDLPNAMN AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LKN
Sbjct: 120 LLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179
Query: 183 R 185
+
Sbjct: 180 Q 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 116 bits (290), Expect = 2e-26
Identities = 54/61 (88%), Positives = 58/61 (95%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LKN
Sbjct: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKN 179
Query: 183 R 185
+
Sbjct: 180 K 180
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 115 bits (289), Expect = 3e-26
Identities = 54/61 (88%), Positives = 58/61 (95%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N
Sbjct: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 179
Query: 183 R 185
+
Sbjct: 180 Q 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 115 bits (289), Expect = 3e-26
Identities = 54/61 (88%), Positives = 58/61 (95%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLLVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N
Sbjct: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 179
Query: 183 R 185
+
Sbjct: 180 Q 180
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 115 bits (287), Expect = 5e-26
Identities = 54/61 (88%), Positives = 56/61 (91%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLLVF NKQDLPNAMN AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LKN
Sbjct: 120 VLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
Query: 183 R 185
+
Sbjct: 180 Q 180
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 113 bits (282), Expect = 2e-25
Identities = 53/62 (85%), Positives = 56/62 (90%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
+LLVFANKQDLPNAMN AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK
Sbjct: 120 LLLVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKR 179
Query: 183 RS 188
+S
Sbjct: 180 KS 181
>sp|P51821|ARF1_CHLRE ADP-ribosylation factor 1
Length = 181
Score = 112 bits (279), Expect = 4e-25
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = +3
Query: 3 VLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 182
VLLVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS L N
Sbjct: 120 VLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLAN 179
Query: 183 RS 188
++
Sbjct: 180 KT 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,272,617
Number of Sequences: 369166
Number of extensions: 755332
Number of successful extensions: 1652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)