Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_G23
(669 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O75886|STAM2_HUMAN Signal transducing adapter molecule 2... 32 1.5
sp|Q9C4Z3|ACDE2_METTE Acetyl-CoA decarbonylase/synthase com... 32 2.0
sp|P53719|YN87_YEAST Hypothetical 23.1 kDa protein in URK1-... 31 3.4
sp|O88811|STAM2_MOUSE Signal transducing adapter molecule 2... 30 4.4
sp|Q8TRZ5|ADE1_METAC Acetyl-CoA decarbonylase/synthase comp... 30 4.4
sp|Q8TJC5|ADE2_METAC Acetyl-CoA decarbonylase/synthase comp... 30 7.5
sp|Q5XHY7|STAM2_RAT Signal transducing adapter molecule 2 (... 29 9.8
sp|Q49164|ACDE2_METMA Acetyl-CoA decarbonylase/synthase com... 29 9.8
sp|P72020|ACDE1_METTE Acetyl-CoA decarbonylase/synthase com... 29 9.8
>sp|O75886|STAM2_HUMAN Signal transducing adapter molecule 2 (STAM-2)
Length = 525
Score = 32.0 bits (71), Expect = 1.5
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +3
Query: 6 YNMLVELNRKTIESFQLYNELMTQGGMSRPTNYMWPANMPAAHAQYTS--LPLQDXXXXX 179
++ L ELN K +E+ +LYN+L+ + P ++ P AH S +P+Q
Sbjct: 344 HSELSELNVKVLEALELYNKLVNEA----PVYSVYSKLHPPAHYPPASSGVPMQTY---- 395
Query: 180 XXXXXXXLNDPMMYQTMNYYGNMNRDSLFGQAFAMNKNQQLPNRNYPATSNINQKST 350
P+ NY G Q++++ +Q P R+ P N+N T
Sbjct: 396 ----------PVQSHGGNYMGQSIHQVTVAQSYSLGPDQIGPLRSLP--PNVNSSVT 440
>sp|Q9C4Z3|ACDE2_METTE Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2 (ACDS
complex epsilon subunit 2)
Length = 170
Score = 31.6 bits (70), Expect = 2.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 402 NFQDLRSLPLQNNYSENSFQSLSNMSQQPHFS 497
NF D++S+ + NY +N+ S N+S+ H +
Sbjct: 130 NFSDVKSISIDRNYIQNATMSFGNLSKADHIA 161
>sp|P53719|YN87_YEAST Hypothetical 23.1 kDa protein in URK1-SMM1 intergenic region
Length = 212
Score = 30.8 bits (68), Expect = 3.4
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Frame = +3
Query: 312 NYPATSNINQKSTFPXXXXXXXXXAVLPAMNF-QDLRSLPLQNNYSE---NSFQSLSNMS 479
NY A S + T P +VLPA +F Q Q SE SF + S+
Sbjct: 91 NYTAASCLTSDPTSPSLLPSSRRNSVLPASDFHQCAHHKNFQRRASEPQLPSFDNRSSSE 150
Query: 480 QQPHFSYVQNDQTFPTQD 533
+ SY Q+ FP D
Sbjct: 151 MKRSVSYAQHSMMFPISD 168
>sp|O88811|STAM2_MOUSE Signal transducing adapter molecule 2 (STAM-2) (Hrs-binding
protein)
Length = 523
Score = 30.4 bits (67), Expect = 4.4
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 6 YNMLVELNRKTIESFQLYNELMTQGGMSRPTNYMWPANMPAAHA 137
++ L ELN K +E+ LYN+L+ + + + + PA+ P A A
Sbjct: 344 HSELSELNVKVLEALDLYNKLVNEAPVYSVYSKLHPAHYPPAAA 387
>sp|Q8TRZ5|ADE1_METAC Acetyl-CoA decarbonylase/synthase complex epsilon subunit 1 (ACDS
complex epsilon subunit 1)
Length = 170
Score = 30.4 bits (67), Expect = 4.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +3
Query: 396 AMNFQDLRSLPLQNNYSENSFQSLSNMSQQPHFS 497
A NF +L+++ ++ Y +N+ S N+S+ H++
Sbjct: 128 AKNFSNLKTIAIERGYIQNATMSFGNLSKADHYA 161
>sp|Q8TJC5|ADE2_METAC Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2 (ACDS
complex epsilon subunit 2)
Length = 170
Score = 29.6 bits (65), Expect = 7.5
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 402 NFQDLRSLPLQNNYSENSFQSLSNMSQQPHFS 497
NF ++++ ++ NY +N+ S N+S+ H++
Sbjct: 130 NFSTVKAIAIERNYIQNATMSFGNLSKADHYA 161
>sp|Q5XHY7|STAM2_RAT Signal transducing adapter molecule 2 (STAM-2)
Length = 523
Score = 29.3 bits (64), Expect = 9.8
Identities = 25/109 (22%), Positives = 45/109 (41%)
Frame = +3
Query: 6 YNMLVELNRKTIESFQLYNELMTQGGMSRPTNYMWPANMPAAHAQYTSLPLQDXXXXXXX 185
++ L ELN K +E+ +LYN+L+ + M + + PA A A +P+Q
Sbjct: 344 HSELSELNVKVLEALELYNKLVNEAPMYSVYSKLHPAPYSATAA---GVPVQTY------ 394
Query: 186 XXXXXLNDPMMYQTMNYYGNMNRDSLFGQAFAMNKNQQLPNRNYPATSN 332
P+ NY G+ Q++ + + +R+ P N
Sbjct: 395 --------PVQSHGGNYLGHGIHQVPVAQSYNLGPDPMGSSRSLPPNMN 435
>sp|Q49164|ACDE2_METMA Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2 (ACDS
complex epsilon subunit 2)
Length = 170
Score = 29.3 bits (64), Expect = 9.8
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +3
Query: 396 AMNFQDLRSLPLQNNYSENSFQSLSNMSQQPHFS 497
A NF +++++ ++ Y +N+ S N+S+ H++
Sbjct: 128 AKNFSNVKAIAIERGYIQNATMSFGNLSKAEHYA 161
>sp|P72020|ACDE1_METTE Acetyl-CoA decarbonylase/synthase complex epsilon subunit 1 (ACDS
complex epsilon subunit 1)
Length = 170
Score = 29.3 bits (64), Expect = 9.8
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +3
Query: 402 NFQDLRSLPLQNNYSENSFQSLSNMSQQPHFS 497
NF ++S+ + +Y +N+ S N+S++ HF+
Sbjct: 130 NFSKVKSISIGKDYIQNATMSFGNISREEHFA 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,978,616
Number of Sequences: 369166
Number of extensions: 1363119
Number of successful extensions: 2911
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2908
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)