Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_G19
(879 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 199 1e-50
sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor 176 1e-43
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 173 5e-43
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 173 5e-43
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 173 6e-43
sp|P61277|CATK_MACMU Cathepsin K precursor >gi|47117667|sp|... 173 6e-43
sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (C... 172 8e-43
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 171 2e-42
sp|Q9GLE3|CATK_PIG Cathepsin K precursor 171 2e-42
sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (C... 171 3e-42
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 199 bits (505), Expect = 1e-50
Identities = 93/220 (42%), Positives = 141/220 (64%), Gaps = 2/220 (0%)
Frame = +3
Query: 60 WKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADLTNEEF 239
W +K ++ KEY D+ RR IWE+N+++IQ+HNL DLG T+TLGLNQF D+T EEF
Sbjct: 21 WHQWKRMYNKEYNGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEF 80
Query: 240 RSKYLSKNLMSRSQINSKFVMPYKT--KLNDDEVDWRKKGVVTPVKNQYGCNAGWAFAAT 413
++KYL++ MSR+ +PY+ + D++DWR+ G VT VK+Q C + WAF+ T
Sbjct: 81 KAKYLTE--MSRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTT 138
Query: 414 GSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPYGMNNEETYPYF 593
G+ EG+Y +SFSE+QL+DCS +GN+GC GG +N++ Y K +G+ E +YPY
Sbjct: 139 GTMEGQYMKNERTSISFSEQQLVDCSGPWGNNGCSGGLMENAYQYLKQFGLETESSYPYT 198
Query: 594 GIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGP 713
++ +C+YN +A V + V +E+++ V A P
Sbjct: 199 AVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRP 238
Score = 35.4 bits (80), Expect = 0.21
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +2
Query: 746 FQFYREEFTMIQLVQKLR-QITQFYCWYGESEGEDYWIVKNSWG 874
F YR Q LR YG G DYWIVKNSWG
Sbjct: 249 FMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWG 292
>sp|Q9JIA9|CATR_MOUSE Cathepsin R precursor
Length = 334
Score = 176 bits (445), Expect = 1e-43
Identities = 91/233 (39%), Positives = 140/233 (60%), Gaps = 2/233 (0%)
Frame = +3
Query: 30 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 209
P +++ L+ EW+ +K+ + K Y +E ++R++WEE L+ I+ HN E LGK+ FT+ +N
Sbjct: 19 PVLDSSLDAEWQDWKIKYNKSYSLKEEKLKRVVWEEKLKMIKLHNRENSLGKNGFTMKMN 78
Query: 210 QFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKT-KLNDDEVDWRKKGVVTPVKNQYGC 386
+F D T+EEFR + ++ + + K +M + + VDWRKKG VTPV+ Q C
Sbjct: 79 EFGDQTDEEFRKMMIEISVWTHRE--GKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDC 136
Query: 387 NAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNY-YKPYG 563
+A WAFA TG+ E + QTG L S + L+DCS GN+GC GG N+F Y G
Sbjct: 137 DACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGG 196
Query: 564 MNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTA 722
+ +E TYPY G C+YN + A + F+ + ++ +I + AAV+ GP+TA
Sbjct: 197 LESEATYPYEGKDGPCRYNPKNSKAEITGFVSLPQSEDI-LMAAVATIGPITA 248
Score = 30.8 bits (68), Expect = 5.2
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 830 ESEGEDYWIVKNSWG 874
E++G YW++KNSWG
Sbjct: 290 ETDGNHYWLIKNSWG 304
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 173 bits (439), Expect = 5e-43
Identities = 94/232 (40%), Positives = 132/232 (56%), Gaps = 2/232 (0%)
Frame = +3
Query: 30 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 209
P + L+ +W +K ++ Y +E RR +WE+N++ I+ HN E GKH FT+ +N
Sbjct: 19 PKFDQNLDTKWYQWKATHRRLYGANEEGWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMN 78
Query: 210 QFADLTNEEFRSKY-LSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGC 386
F D+TNEEFR +N R F P L VDWRKKG VTPVKNQ C
Sbjct: 79 AFGDMTNEEFRQMMGCFRNQKFRK--GKVFREPLFLDL-PKSVDWRKKGYVTPVKNQKQC 135
Query: 387 NAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-G 563
+ WAF+ATG+ EG+ +TG L+S SE+ L+DCS GN GC GG +F Y K G
Sbjct: 136 GSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGG 195
Query: 564 MNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLT 719
+++EE+YPY + + CKY + +A+ F VA E + AV+ GP++
Sbjct: 196 LDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPIS 247
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 173 bits (439), Expect = 5e-43
Identities = 93/232 (40%), Positives = 137/232 (59%), Gaps = 2/232 (0%)
Frame = +3
Query: 30 PTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLN 209
P + LN +W +K ++ Y +E RR +WE+N++ I+ HN E GKH FT+ +N
Sbjct: 19 PKFDQSLNAQWYQWKATHRRLYGMNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMN 78
Query: 210 QFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCN 389
F D+TNEEFR + ++ + + F P ++ VDWR+KG VTPVKNQ C
Sbjct: 79 AFGDMTNEEFR-QVMNGFQNQKHKKGKMFQEPLFAEI-PKSVDWREKGYVTPVKNQGQCG 136
Query: 390 AGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY-GM 566
+ WAF+ATG+ EG+ +TG L+S SE+ L+DCS A GN GC GG DN+F Y K G+
Sbjct: 137 SCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGL 196
Query: 567 NNEETYPYFG-IKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLT 719
++EE+YPY G + C Y A+ F+D+ + E + AV+ GP++
Sbjct: 197 DSEESYPYLGRDTETCNYKPECSAANDTGFVDLPQ-REKALMKAVATLGPIS 247
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 173 bits (438), Expect = 6e-43
Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 1/239 (0%)
Frame = +3
Query: 6 VSHATLHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGK 185
++ ATL T + L +W +K + + Y +E RR +WE+N++ I+ HN E GK
Sbjct: 14 IASATL---TFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGK 70
Query: 186 HTFTLGLNQFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTP 365
H+FT+ +N F D+T+EEFR + +R K VDWR+KG VTP
Sbjct: 71 HSFTMAMNAFGDMTSEEFRQ--VMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTP 128
Query: 366 VKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFN 545
VKNQ C + WAF+ATG+ EG+ +TG L+S SE+ L+DCS GN GC GG D +F
Sbjct: 129 VKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ 188
Query: 546 YYKPY-GMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLT 719
Y + G+++EE+YPY ++ CKYN +A+ F+D+ + E + AV+ GP++
Sbjct: 189 YVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QEKALMKAVATVGPIS 246
Score = 30.0 bits (66), Expect = 8.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 830 ESEGEDYWIVKNSWG 874
ES+ YW+VKNSWG
Sbjct: 289 ESDNNKYWLVKNSWG 303
>sp|P61277|CATK_MACMU Cathepsin K precursor
sp|P61276|CATK_MACFA Cathepsin K precursor
Length = 329
Score = 173 bits (438), Expect = 6e-43
Identities = 95/244 (38%), Positives = 135/244 (55%), Gaps = 3/244 (1%)
Frame = +3
Query: 48 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 224
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 225 TNEEFRSKYLS-KNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 401
TNEE K K S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TNEEVVQKMTGLKVPASHSRSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 402 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNY-YKPYGMNNEE 578
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 579 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAI*MQVFLLFSFI 758
YPY G ++ C YN A + ++ NE + AV+ GP++ F F
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 759 GKNL 770
K +
Sbjct: 260 SKGV 263
Score = 35.8 bits (81), Expect = 0.16
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 725 IDASLPSFQFYREEFTMIQLVQKLR-QITQFYCWYGESEGEDYWIVKNSWG 874
IDASL SFQFY + + YG +G +WI+KNSWG
Sbjct: 249 IDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWG 299
>sp|P43235|CATK_HUMAN Cathepsin K precursor (Cathepsin O) (Cathepsin X) (Cathepsin O2)
Length = 329
Score = 172 bits (437), Expect = 8e-43
Identities = 93/244 (38%), Positives = 136/244 (55%), Gaps = 3/244 (1%)
Frame = +3
Query: 48 LNNEWKAFKLLFKKEYE-PIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 224
L+ W+ +K +K+Y +DE+ RRLIWE+NL+YI HNLEA LG HT+ L +N D+
Sbjct: 22 LDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDM 81
Query: 225 TNEEFRSKYLSKNL-MSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 401
T+EE K + +S S+ N +P D VD+RKKG VTPVKNQ C + WA
Sbjct: 82 TSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWA 141
Query: 402 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNY-YKPYGMNNEE 578
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 142 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 199
Query: 579 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAI*MQVFLLFSFI 758
YPY G ++ C YN A + ++ NE + AV+ GP++ F F
Sbjct: 200 AYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 259
Query: 759 GKNL 770
K +
Sbjct: 260 SKGV 263
Score = 35.8 bits (81), Expect = 0.16
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 725 IDASLPSFQFYREEFTMIQLVQKLR-QITQFYCWYGESEGEDYWIVKNSWG 874
IDASL SFQFY + + YG +G +WI+KNSWG
Sbjct: 249 IDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWG 299
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 171 bits (434), Expect = 2e-42
Identities = 93/234 (39%), Positives = 136/234 (58%), Gaps = 1/234 (0%)
Frame = +3
Query: 21 LHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLGKHTFTL 200
L P + + EW +K ++ Y +E RR IWE+N+R IQ HN E G+H F++
Sbjct: 16 LATPKFDQTFSAEWHQWKSTHRRLYGTNEEEWRRAIWEKNMRMIQLHNGEYSNGQHGFSM 75
Query: 201 GLNQFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQY 380
+N F D+TNEEFR + ++ + + F P K+ VDWR+KG VTPVKNQ
Sbjct: 76 EMNAFGDMTNEEFR-QVVNGYRHQKHKKGRLFQEPLMLKI-PKSVDWREKGCVTPVKNQG 133
Query: 381 GCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNYYKPY 560
C + WAF+A+G EG+ ++TG L+S SE+ L+DCS A GN GC GG D +F Y K
Sbjct: 134 QCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDFAFQYIKEN 193
Query: 561 -GMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLT 719
G+++EE+YPY CKY +A+ F+D+ + E + AV+ GP++
Sbjct: 194 GGLDSEESYPYEAKDGSCKYRAEFAVANDTGFVDIPQ-QEKALMKAVATVGPIS 246
Score = 30.0 bits (66), Expect = 8.9
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 725 IDASLPSFQFYREE-FTMIQLVQKLRQITQFYCWYG----ESEGEDYWIVKNSWGA 877
+DAS PS QFY + K YG +S YW+VKNSWG+
Sbjct: 249 MDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNKYWLVKNSWGS 304
>sp|Q9GLE3|CATK_PIG Cathepsin K precursor
Length = 330
Score = 171 bits (433), Expect = 2e-42
Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 3/244 (1%)
Frame = +3
Query: 48 LNNEWKAFKLLFKKEYEP-IDEVVRRLIWEENLRYIQKHNLEADLGKHTFTLGLNQFADL 224
L+ +W+ +K ++K+Y +DE+ RRLIWE+NL++I HNLEA LG HT+ L +N D+
Sbjct: 23 LDTQWELWKKTYRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDM 82
Query: 225 TNEEFRSKYLSKNLM-SRSQINSKFVMPYKTKLNDDEVDWRKKGVVTPVKNQYGCNAGWA 401
T+EE K + S S+ N +P D +D+RKKG VTPVKNQ C + WA
Sbjct: 83 TSEEVVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWA 142
Query: 402 FAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSFNY-YKPYGMNNEE 578
F++ G+ EG+ +TG L++ S + L+DC N GC GG N+F Y K G+++E+
Sbjct: 143 FSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE--NDGCGGGYMTNAFQYVQKNRGIDSED 200
Query: 579 TYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLTAI*MQVFLLFSFI 758
YPY G + C YN A + ++ NE + AV+ GP++ F F
Sbjct: 201 AYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 260
Query: 759 GKNL 770
K +
Sbjct: 261 SKGV 264
Score = 36.2 bits (82), Expect = 0.12
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +2
Query: 725 IDASLPSFQFYR------EEFTMIQLVQKLRQITQFYCWYGESEGEDYWIVKNSWG 874
IDASL SFQFY E L + + YG +G+ +WI+KNSWG
Sbjct: 250 IDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVG-----YGIQKGKKHWIIKNSWG 300
>sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (Catlrp-p)
Length = 333
Score = 171 bits (432), Expect = 3e-42
Identities = 92/241 (38%), Positives = 139/241 (57%), Gaps = 1/241 (0%)
Frame = +3
Query: 3 VVSHATLHQPTINAQLNNEWKAFKLLFKKEYEPIDEVVRRLIWEENLRYIQKHNLEADLG 182
V S A H P ++A EWK +K + K Y P +E +RR +WEEN+R I+ HN E LG
Sbjct: 14 VASGAQAHDPKLDA----EWKDWKTKYAKSYSP-EEALRRAVWEENMRMIKLHNKENSLG 68
Query: 183 KHTFTLGLNQFADLTNEEFRSKYLSKNLMSRSQINSKFVMPYKTKLNDDEVDWRKKGVVT 362
K+ FT+ +N+F D T+EEFR N+ + + + + D DWR++G VT
Sbjct: 69 KNNFTMKMNKFGDQTSEEFRKSI--DNIPIPAAMTDPHAQNHVSIGLPDYKDWREEGYVT 126
Query: 363 PVKNQYGCNAGWAFAATGSCEGRYAMQTGVLMSFSEEQLIDCSDAYGNSGCKGGSPDNSF 542
PV+NQ C + WAFAA G+ EG+ +TG L S + L+DCS GN GC+ G+ +F
Sbjct: 127 PVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAF 186
Query: 543 NY-YKPYGMNNEETYPYFGIKDRCKYNNNSVIAHVVSFIDVARNNEIQVAAAVSAEGPLT 719
Y K G+ E TYPY G C+Y + + A++ ++++ NE+ + AV++ GP++
Sbjct: 187 EYVLKNKGLEAEATYPYEGKDGPCRYRSENASANITDYVNLP-PNELYLWVAVASIGPVS 245
Query: 720 A 722
A
Sbjct: 246 A 246
Score = 31.6 bits (70), Expect = 3.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +2
Query: 725 IDASLPSFQFYR-----EEFTMIQLVQKLRQITQFYCWYGESEGEDYWIVKNSWG 874
IDAS SF+FY E V + + +G +YW++KNSWG
Sbjct: 248 IDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVKDGNNYWLIKNSWG 302
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,366,827
Number of Sequences: 369166
Number of extensions: 1877061
Number of successful extensions: 5557
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5247
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)