Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_G03
(604 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 110 2e-24
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 103 3e-22
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 94 3e-19
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 93 6e-19
sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx) 89 9e-18
sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin) 89 9e-18
sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor 87 3e-17
sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 pre... 87 4e-17
sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precurs... 87 4e-17
sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich ven... 86 6e-17
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 110 bits (276), Expect = 2e-24
Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Frame = +2
Query: 26 FMFVGQNMFAGS----NYKEVVQGWYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCA 193
F +G+N++ GS + + WYDE +DY ++ + C VCGHYTQV WA SY VGCA
Sbjct: 93 FTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCA 152
Query: 194 AVNCKEKTG-GSFAYGWLFICNYGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 355
C + +G + + G FICNYGP GN+ PY+ GA CS CP C +NLC
Sbjct: 153 VQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRGATCSACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 103 bits (257), Expect = 3e-22
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Frame = +2
Query: 26 FMFVGQNMFAGS----NYKEVVQGWYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCA 193
F +G+N++ GS + + WY+E K Y + + C VCGHYTQV WA SY +GCA
Sbjct: 91 FTALGENIWLGSLSIFSVSSAISAWYEEIKHYDFSTRKCRHVCGHYTQVVWADSYKLGCA 150
Query: 194 AVNCKEKTGGSFAYGWLFICNYGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 355
C G FIC+YGPAGN+ PY+ GA CS CPK C N+LC
Sbjct: 151 VQLCPN--------GANFICDYGPAGNY-PTWPYKQGATCSDCPKDDKCLNSLC 195
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 93.6 bits (231), Expect = 3e-19
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Frame = +2
Query: 38 GQNMFAGSN---YKEVVQGWYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAV 199
G+N+F S+ + ++Q WYDEY+++ Y G G + +V GHYTQ+ W KSY VGCAA
Sbjct: 92 GENIFMASDPWAWTSIIQDWYDEYRNFVY-GVGANPPDSVTGHYTQIVWYKSYLVGCAAA 150
Query: 200 NCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 355
C S Y + ++C Y PAGN + PY G C+ CP ++C N LC
Sbjct: 151 YCP-----SSLYNYFYVCQYCPAGNIQGSTSTPYASGPTCADCP--SNCDNGLC 197
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 92.8 bits (229), Expect = 6e-19
Identities = 47/114 (41%), Positives = 62/114 (54%), Gaps = 8/114 (7%)
Frame = +2
Query: 38 GQNMFAGS---NYKEVVQGWYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAV 199
G+N++ + +++ W+DEYKD+ Y G G +AV GHYTQ+ W KSY +GCAA
Sbjct: 86 GENIYMSPYPMKWTDIIHAWHDEYKDFKY-GVGADPPNAVTGHYTQIVWYKSYRIGCAAA 144
Query: 200 NCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 355
C S Y + F+C Y PAGNF PY G C CP + C N LC
Sbjct: 145 YCP-----SSPYSYFFVCQYCPAGNFIGKTATPYTSGTPCGDCP--SDCDNGLC 191
>sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx)
Length = 238
Score = 89.0 bits (219), Expect = 9e-18
Identities = 46/113 (40%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Frame = +2
Query: 38 GQNMFAGSN---YKEVVQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVN 202
G+N+F S + VVQ WYDE K++ Y K +V GHYTQV W KSY +GCA+
Sbjct: 93 GENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAK 152
Query: 203 CKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 355
C +L++C Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 153 CSSSK-------YLYVCQYCPAGNIRGSIATPYKSGPPCADCP--SACVNKLC 196
>sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin)
Length = 239
Score = 89.0 bits (219), Expect = 9e-18
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Frame = +2
Query: 38 GQNMFAGSN---YKEVVQGWYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAV 199
G+N++ SN + E++Q W+DEYK++ Y G G + +V GHYTQ+ W K+Y +GCA
Sbjct: 92 GENIYMSSNPRAWTEIIQLWHDEYKNFVY-GVGANPPGSVTGHYTQIVWYKTYRIGCAVN 150
Query: 200 NCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 355
C S Y + ++C Y P+GN + PY+ G C CP ++C N LC
Sbjct: 151 YCP-----SSEYSYFYVCQYCPSGNMRGSTATPYKSGPTCGDCP--SACDNGLC 197
>sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor
Length = 238
Score = 87.0 bits (214), Expect = 3e-17
Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Frame = +2
Query: 38 GQNMFAGSN---YKEVVQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVN 202
G+N+F S + VVQ WYDE K++ Y K +V GHYTQV W KS+ +GCA+
Sbjct: 93 GENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAK 152
Query: 203 CKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 355
C +L++C Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 153 CSSSK-------YLYVCQYCPAGNIRGSIATPYKSGPPCADCP--SACVNRLC 196
>sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 precursor (CRISP-3)
Length = 245
Score = 86.7 bits (213), Expect = 4e-17
Identities = 46/116 (39%), Positives = 66/116 (56%), Gaps = 7/116 (6%)
Frame = +2
Query: 29 MFVGQNMFAGS---NYKEVVQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCA 193
M G+N+F S ++ + +Q W+DE D+ Y K +AV GHYTQV W SY VGC
Sbjct: 94 MKCGENLFMSSIPNSWSDAIQNWHDEVHDFKYGVGPKTPNAVVGHYTQVVWYSSYRVGCG 153
Query: 194 AVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 355
C ++ G+ Y ++C Y PAGN+ ++ PYE G C++CP +C N LC
Sbjct: 154 IAYCPKQ--GTLKY--YYVCQYCPAGNYVNKINTPYEQGTPCARCP--GNCDNGLC 203
>sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precursor (CRVP)
Length = 238
Score = 86.7 bits (213), Expect = 4e-17
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Frame = +2
Query: 11 RQLDKFMFVGQNMFAGSN---YKEVVQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKS 175
R + KF G+N+F S + VVQ WYDE K++ Y K +V GHYTQ+ W KS
Sbjct: 85 RTVGKFR-CGENIFMSSQPFAWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQIVWYKS 143
Query: 176 YAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNN 349
+ +GCA+ C +L++C Y PAGN PY+ G +C CP ++C N
Sbjct: 144 HLLGCASAKCSSTK-------YLYVCQYCPAGNIRSSIATPYKSGPSCGDCP--SACVNG 194
Query: 350 LC 355
LC
Sbjct: 195 LC 196
>sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich venom protein 1) (NA-CRVP1)
(Protein G2a)
Length = 239
Score = 86.3 bits (212), Expect = 6e-17
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Frame = +2
Query: 38 GQNMFAGSN---YKEVVQGWYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAV 199
G++++ SN + E++ W+DEYK++ Y G G + +V GHYTQ+ W ++Y GCA
Sbjct: 92 GESIYMSSNARTWTEIIHLWHDEYKNFVY-GVGANPPGSVTGHYTQIVWYQTYRAGCAVS 150
Query: 200 NCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 355
C S A+ + ++C Y P+GNF + PY++G C CP ++C N LC
Sbjct: 151 YCP-----SSAWSYFYVCQYCPSGNFQGKTATPYKLGPPCGDCP--SACDNGLC 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,378,362
Number of Sequences: 369166
Number of extensions: 1287514
Number of successful extensions: 4214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4078
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4650991475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)