Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_F17
(435 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22) 186 2e-47
sp|P18445|RL27A_RAT 60S ribosomal protein L27a 184 9e-47
sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a >gi|117301... 182 3e-46
sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a 181 8e-46
sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29) 181 8e-46
sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal... 164 8e-41
sp|P41092|RL27A_DROME 60S ribosomal protein L27a 158 4e-39
sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a 158 5e-39
sp|P48160|RL27A_DICDI 60S ribosomal protein L27a 155 5e-38
sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29) 152 2e-37
>sp|P47830|RL27A_XENLA 60S ribosomal protein L27a (L22)
Length = 148
Score = 186 bits (471), Expect = 2e-47
Identities = 82/115 (71%), Positives = 102/115 (88%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHHRI+FDK+HPGYFGKVGMRHYHL+KN++FCP++N++KLW++VS++T + N
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKN 93
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
EG AP+ID + AGY+K+LGKG LPK PVIVKAKFFSR+AEEKIK+VGGACVL A
Sbjct: 94 LEGPAPIIDAVHAGYYKVLGKGKLPKQPVIVKAKFFSRKAEEKIKSVGGACVLGA 148
>sp|P18445|RL27A_RAT 60S ribosomal protein L27a
Length = 148
Score = 184 bits (466), Expect = 9e-47
Identities = 80/115 (69%), Positives = 102/115 (88%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHHRI+FDK+HPGYFGKVGMRHYHL++N++FCP++N++KLW++VS++T N
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 94 KNGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|Q5REY2|RL27A_PONPY 60S ribosomal protein L27a
sp|P46776|RL27A_HUMAN 60S ribosomal protein L27a
Length = 148
Score = 182 bits (462), Expect = 3e-46
Identities = 79/115 (68%), Positives = 103/115 (89%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHHRI+FDK+HPGYFGKVGM+HYHL++N++FCP++N++KLW++VS++T N
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIK+VGGACVLVA
Sbjct: 94 KTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>sp|Q5R1X0|RL27A_PANTR 60S ribosomal protein L27a
Length = 148
Score = 181 bits (458), Expect = 8e-46
Identities = 78/114 (68%), Positives = 102/114 (89%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHHRI+FDK+HPGYFGKVGM+HYHL++N++FCP++N++KLW++VS++T N
Sbjct: 34 NAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKN 93
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLV 402
G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIK+VGGACVLV
Sbjct: 94 KTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147
>sp|P14115|RL27A_MOUSE 60S ribosomal protein L27a (L29)
Length = 148
Score = 181 bits (458), Expect = 8e-46
Identities = 79/115 (68%), Positives = 101/115 (87%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHHRI+FDK+HPGYFGKVGMRHYHL++N++FCP++N++K W++VS++T N
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKPWTLVSEQTRVNAAKN 93
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
G AP+ID++++GY+K+LGKG LPK PVIVKAKFFSR+AEEKIK VGGACVLVA
Sbjct: 94 KTGVAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGVGGACVLVA 148
>sp|O01358|RL27A_OSCBR 60S ribosomal protein L27a (Ribosomal protein RPL-27)
Length = 145
Score = 164 bits (415), Expect = 8e-41
Identities = 77/115 (66%), Positives = 97/115 (84%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGGQHHHRI+ DK+HPGYFGKVGMR +HL KN +CP++N+++LW++V +E + K +
Sbjct: 34 NAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNHHYCPTVNVDRLWALVPEE--QKTKVS 91
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
E KAPVID +KAGYFK+LGKG+LPK P+IVKAKFFS +AE KIKA GGAC+LVA
Sbjct: 92 AE-KAPVIDCVKAGYFKVLGKGLLPKQPLIVKAKFFSHEAENKIKAAGGACILVA 145
>sp|P41092|RL27A_DROME 60S ribosomal protein L27a
Length = 149
Score = 158 bits (400), Expect = 4e-39
Identities = 71/115 (61%), Positives = 90/115 (78%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHHRI+FDK+HPGYFGKVGMR++HLR+ F P +N++KLWS+V E + +
Sbjct: 35 NAGGMHHHRINFDKYHPGYFGKVGMRNFHLRRQHKFRPEINLDKLWSLVGAEKFAELEKE 94
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
KAPVIDL+K GY+KLLG+G LP PVIVKAK+FS++AE+KIK GG C+L A
Sbjct: 95 KSTKAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149
>sp|Q27021|RL27A_TENMO 60S ribosomal protein L27a
Length = 148
Score = 158 bits (399), Expect = 5e-39
Identities = 70/115 (60%), Positives = 93/115 (80%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHHRI+FDK+HPGYFGK+GMR+YHLR+N + P++N++KLW++VS++T Y+N+
Sbjct: 34 NAGGMHHHRINFDKYHPGYFGKLGMRNYHLRRNSKWAPAINLDKLWTLVSEQTRSKYQNH 93
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
EGKAPVID++KAGY+KLLGKG ++K F + E+KIKAVGGACVL A
Sbjct: 94 PEGKAPVIDIVKAGYYKLLGKGACLTNLSLLKPSFSLNRLEDKIKAVGGACVLSA 148
>sp|P48160|RL27A_DICDI 60S ribosomal protein L27a
Length = 148
Score = 155 bits (391), Expect = 5e-38
Identities = 65/115 (56%), Positives = 94/115 (81%)
Frame = +1
Query: 61 NAGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNN 240
NAGG HHRI+FDK+HPGYFGK+GMRH+HL +N+ CP++++EK+W++V + ++
Sbjct: 34 NAGGLTHHRINFDKYHPGYFGKLGMRHFHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAK 93
Query: 241 TEGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
+G APV+D+ + G+FK+LG G+LP P+IVKA++FS+ AE+KIKAVGGAC+LVA
Sbjct: 94 NDGTAPVVDVTQKGFFKVLGHGILPTQPIIVKARYFSKVAEKKIKAVGGACILVA 148
>sp|Q00454|RL27A_TETTH 60S ribosomal protein L27a (L29)
Length = 149
Score = 152 bits (385), Expect = 2e-37
Identities = 71/114 (62%), Positives = 90/114 (78%)
Frame = +1
Query: 64 AGGQHHHRIHFDKFHPGYFGKVGMRHYHLRKNRTFCPSLNIEKLWSVVSDETYETYKNNT 243
AGG HHHRI +K+HPGY+GK+GMR +HL+KN CP +NI+KLWS+VSD T + Y +
Sbjct: 37 AGGMHHHRILMEKWHPGYYGKLGMRTFHLKKNPLHCPVVNIDKLWSLVSDATRQKYAEDK 96
Query: 244 EGKAPVIDLMKAGYFKLLGKGVLPKIPVIVKAKFFSRQAEEKIKAVGGACVLVA 405
+ K PVID+ KAG+FK+LGKG LP PV+VKAK+FS+ AE +I AVGGACVL A
Sbjct: 97 K-KVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACVLTA 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,721,691
Number of Sequences: 369166
Number of extensions: 781401
Number of successful extensions: 2442
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2411
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)