Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_F16
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02874|H2AY_RAT Core histone macro-H2A.1 (Histone macroH... 144 3e-34
sp|O75367|H2AY_HUMAN Core histone macro-H2A.1 (Histone macr... 140 3e-33
sp|Q9P0M6|H2AW_HUMAN Core histone macro-H2A.2 (Histone macr... 126 7e-29
sp|Q8RB30|Y995_THETN Hypothetical UPF0189 protein TTE0995 101 2e-21
sp|P67341|YMDB_SALTY Hypothetical UPF0189 protein ymdB >gi|... 97 4e-20
sp|Q72M93|Y3295_LEPIC Hypothetical UPF0189 protein LIC13295 93 9e-19
sp|Q8EYT0|Y4133_LEPIN Hypothetical UPF0189 protein LA4133 93 9e-19
sp|Q8Y3S3|Y2759_LISMO Hypothetical UPF0189 protein lmo2759 89 1e-17
sp|Q926Y8|Y2902_LISIN Hypothetical UPF0189 protein lin2902 88 2e-17
sp|Q8CAS9|BAL_MOUSE B aggressive lymphoma protein homolog 87 6e-17
>sp|Q02874|H2AY_RAT Core histone macro-H2A.1 (Histone macroH2A1) (mH2A1) (H2A.y)
(H2A/y)
Length = 371
Score = 144 bits (363), Expect = 3e-34
Identities = 74/192 (38%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Frame = +2
Query: 62 SNSLDVLNERTLFLGQKLVVVQGDIVEMSA---DAVVHPTGGSYGFGGEVGCALSNKGGA 232
++ VL+ ++LFLGQKL ++ +I ++ +A+++PT ++G L KGG
Sbjct: 179 TDGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGSTLEKKGGK 238
Query: 233 ELTNEVNKLRATKPSIKVCEAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNI 412
E V +LR ++V AAVS +P K++IH NSP W S+ + LEK + N
Sbjct: 239 EFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSDKCEEL--LEKTVKNC 296
Query: 413 LDAADNFNIQSLALPSISSGGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKE 592
L AD+ ++S+A PSI SG G+PKQ AA+ IL+ I+SYF S+IK +YFV++D E
Sbjct: 297 LALADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSE 356
Query: 593 TLDVYKAELTKL 628
++ +Y E+ KL
Sbjct: 357 SIGIYVQEMAKL 368
>sp|O75367|H2AY_HUMAN Core histone macro-H2A.1 (Histone macroH2A1) (mH2A1) (H2A.y)
(H2A/y)
Length = 372
Score = 140 bits (354), Expect = 3e-33
Identities = 73/192 (38%), Positives = 115/192 (59%), Gaps = 3/192 (1%)
Frame = +2
Query: 62 SNSLDVLNERTLFLGQKLVVVQGDIVEMSA---DAVVHPTGGSYGFGGEVGCALSNKGGA 232
++ VL+ ++LFLGQKL ++ +I ++ +A+++PT ++G L KGG
Sbjct: 180 ADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDPKDDLGNTLEKKGGK 239
Query: 233 ELTNEVNKLRATKPSIKVCEAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNI 412
E V +LR ++V AAVS +P K++IH NSP W ++ + LEK + N
Sbjct: 240 EFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEEL--LEKTVKNC 297
Query: 413 LDAADNFNIQSLALPSISSGGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKE 592
L AD+ ++S+A PSI SG G+PKQ AA+ IL+ I+SYF S+IK +YFV++D E
Sbjct: 298 LALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSE 357
Query: 593 TLDVYKAELTKL 628
++ +Y E+ KL
Sbjct: 358 SIGIYVQEMAKL 369
>sp|Q9P0M6|H2AW_HUMAN Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2)
Length = 372
Score = 126 bits (316), Expect = 7e-29
Identities = 66/187 (35%), Positives = 109/187 (58%), Gaps = 3/187 (1%)
Frame = +2
Query: 77 VLNERTLFLGQKLVVVQGDIVE---MSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNE 247
+L+ ++L LGQKL + Q DI M + +VHPT ++G AL GG E
Sbjct: 185 ILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKEFLET 244
Query: 248 VNKLRATKPSIKVCEAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNILDAAD 427
V +LR ++ ++V EAAVS + + K++IH + P W S+ LE+ I N L AA+
Sbjct: 245 VKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDK--CEEQLEETIKNCLSAAE 302
Query: 428 NFNIQSLALPSISSGGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKETLDVY 607
+ ++S+A P SG +PKQ AA+ L+ I+++F + S++K +YF+++D E++ +Y
Sbjct: 303 DKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIY 362
Query: 608 KAELTKL 628
E+ KL
Sbjct: 363 VQEMAKL 369
>sp|Q8RB30|Y995_THETN Hypothetical UPF0189 protein TTE0995
Length = 175
Score = 101 bits (251), Expect = 2e-21
Identities = 54/174 (31%), Positives = 90/174 (51%)
Frame = +2
Query: 107 QKLVVVQGDIVEMSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNEVNKLRATKPSIKV 286
+K+ +++G+IV+ DA+V+ S GG V A+ GG + E+ +R +
Sbjct: 3 EKIKLIKGNIVDQEVDAIVNAANSSLIGGGGVDGAIHKAGGPAIAEELKVIREKQGGCPT 62
Query: 287 CEAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNILDAADNFNIQSLALPSIS 466
A ++GA N+ KY+IH P W + L A L AD +N++++A PSIS
Sbjct: 63 GHAVITGAGNLKAKYVIHAVGPIWKGGNHNEDNLLASAYIESLKLADEYNVKTIAFPSIS 122
Query: 467 SGGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKETLDVYKAELTKL 628
+G G+P + AA LR ++ Y G S+IK++ FV++ +VY +L
Sbjct: 123 TGAYGFPVERAARIALRVVSDYLEG---SSIKEVRFVLFSDRDYEVYSKAYEEL 173
>sp|P67341|YMDB_SALTY Hypothetical UPF0189 protein ymdB
sp|P67342|YMDB_SALTI Hypothetical UPF0189 protein ymdB
Length = 179
Score = 97.4 bits (241), Expect = 4e-20
Identities = 57/172 (33%), Positives = 90/172 (52%)
Frame = +2
Query: 110 KLVVVQGDIVEMSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNEVNKLRATKPSIKVC 289
+L V+QGDI ++S DA+V+ S GG V A+ G L + +R + +
Sbjct: 4 RLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGECQTG 63
Query: 290 EAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNILDAADNFNIQSLALPSISS 469
A ++ A + K +IH P W + LE+A N L A+ + +S+A P+IS+
Sbjct: 64 HAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAIST 123
Query: 470 GGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKETLDVYKAELTK 625
G GYP+ AAE +RT++ + A +Q+YFV YD+ET +Y LT+
Sbjct: 124 GVYGYPRAQAAEVAVRTVSDFITRYALP--EQVYFVCYDEETARLYARLLTQ 173
>sp|Q72M93|Y3295_LEPIC Hypothetical UPF0189 protein LIC13295
Length = 175
Score = 92.8 bits (229), Expect = 9e-19
Identities = 50/169 (29%), Positives = 90/169 (53%)
Frame = +2
Query: 101 LGQKLVVVQGDIVEMSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNEVNKLRATKPSI 280
+ K+ +++ DI ++ DA+V+ S GG V A+ GG E+ E K+R +
Sbjct: 1 MNNKIKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGEC 60
Query: 281 KVCEAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNILDAADNFNIQSLALPS 460
KV EA ++ A + K+IIH P W+ L A N L A N +++++A P+
Sbjct: 61 KVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPN 120
Query: 461 ISSGGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKETLDVY 607
IS+G +PK+ AA+ ++++ + + I+ ++FV +D E L++Y
Sbjct: 121 ISTGIYHFPKERAAKIAIQSVTKFLK--QDNQIQTVFFVCFDFENLEIY 167
>sp|Q8EYT0|Y4133_LEPIN Hypothetical UPF0189 protein LA4133
Length = 175
Score = 92.8 bits (229), Expect = 9e-19
Identities = 50/169 (29%), Positives = 90/169 (53%)
Frame = +2
Query: 101 LGQKLVVVQGDIVEMSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNEVNKLRATKPSI 280
+ K+ +++ DI ++ DA+V+ S GG V A+ GG E+ E K+R +
Sbjct: 1 MNNKIKLIKEDITQLEVDAIVNAANSSLLGGGGVDGAIHRAGGPEILEECYKIREKQGEC 60
Query: 281 KVCEAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNILDAADNFNIQSLALPS 460
KV EA ++ A + K+IIH P W+ L A N L A N +++++A P+
Sbjct: 61 KVGEAVITTAGRLNAKFIIHTVGPIWSGGNKNEDELLSNAYKNSLLLAKNHSLKTIAFPN 120
Query: 461 ISSGGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKETLDVY 607
IS+G +PK+ AA+ ++++ + + I+ ++FV +D E L++Y
Sbjct: 121 ISTGIYHFPKERAAKIAIQSVTEFLK--QDNQIQTVFFVCFDFENLEIY 167
>sp|Q8Y3S3|Y2759_LISMO Hypothetical UPF0189 protein lmo2759
Length = 176
Score = 89.4 bits (220), Expect = 1e-17
Identities = 51/166 (30%), Positives = 82/166 (49%)
Frame = +2
Query: 110 KLVVVQGDIVEMSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNEVNKLRATKPSIKVC 289
++ +V+GDI E D +V+ GG V A+ G +L E ++ S
Sbjct: 2 EITIVKGDITEQEVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAG 61
Query: 290 EAAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNILDAADNFNIQSLALPSISS 469
EA ++ A ++ YIIH P W + L LD A ++ S+A P+IS+
Sbjct: 62 EAVITSAGDLKATYIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNIST 121
Query: 470 GGGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKETLDVY 607
G G+PK++AAE L T+ + ++IK+I FV +D+E L +Y
Sbjct: 122 GVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLY 167
>sp|Q926Y8|Y2902_LISIN Hypothetical UPF0189 protein lin2902
Length = 176
Score = 88.2 bits (217), Expect = 2e-17
Identities = 51/165 (30%), Positives = 82/165 (49%)
Frame = +2
Query: 113 LVVVQGDIVEMSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNEVNKLRATKPSIKVCE 292
+ VV+GDI E + D +V+ GG V A+ G +L E ++ S E
Sbjct: 3 ITVVKGDITEQNVDVIVNAANPGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGE 62
Query: 293 AAVSGAVNIPYKYIIHVNSPSWTSNTNTAIANLEKAINNILDAADNFNIQSLALPSISSG 472
A ++ A ++ +IIH P W + L LD A ++ S+A P+IS+G
Sbjct: 63 AVITSAGDLKAHFIIHAVGPIWKDGEHQEANKLASCYWKALDLAAGKDLTSIAFPNISTG 122
Query: 473 GGGYPKQIAAETILRTINSYFAGVAKSNIKQIYFVIYDKETLDVY 607
G+PK++AAE L T+ + S+IK++ FV +D+E L +Y
Sbjct: 123 VYGFPKKLAAEVALYTVRKWAEEEYDSSIKEVRFVCFDEENLTLY 167
>sp|Q8CAS9|BAL_MOUSE B aggressive lymphoma protein homolog
Length = 866
Score = 86.7 bits (213), Expect = 6e-17
Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Frame = +2
Query: 89 RTLFLGQKLVVVQGDIVEMSADAVVHPTGGSYGFGGEVGCALSNKGGAELTNEVNKLRAT 268
RTL G +L V + D+ DAVV+ + G + +L GG E+ E ++ A
Sbjct: 114 RTLIPGIELSVWKDDLTRHVVDAVVNAANENLLHGSGLAGSLVKTGGFEIQEESKRIIAN 173
Query: 269 KPSIKVCEAAVSGAVNIPYKYIIHVNSPSWT-SNTNTAIANLEKAINNILDAADNFN--I 439
I V A++GA +P IIH P WT +N+ TAI L+ AI NILD ++ I
Sbjct: 174 VGKISVGGIAITGAGRLPCHLIIHAVGPRWTVTNSQTAIELLKFAIRNILDYVTKYDLRI 233
Query: 440 QSLALPSISSGGGGYPKQIAAETILRTINSYFAGVAK-SNIKQIYFVIYDKETLDVYKA 613
+++A+P++SSG +P + IL TI YF N+++I+ V + T+ +K+
Sbjct: 234 KTVAIPALSSGIFQFPLDLCTSIILETIRLYFQDKQMFGNLREIHLVSNEDPTVASFKS 292
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,761,217
Number of Sequences: 369166
Number of extensions: 1387174
Number of successful extensions: 4006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3961
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)