Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_F06
(549 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8Y9G3|HIS5_LISMO Imidazole glycerol phosphate synthase ... 31 2.3
sp|Q5I043|UBP28_MOUSE Ubiquitin carboxyl-terminal hydrolase... 30 3.9
sp|Q96RU2|UBP28_HUMAN Ubiquitin carboxyl-terminal hydrolase... 30 3.9
sp|P03243|E1BL_ADE05 E1B protein, large T-antigen 30 5.1
sp|P03244|E1BL_ADE02 E1B protein, large T-antigen 30 5.1
sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog 30 5.1
sp|P25355|YCU4_YEAST Hypothetical 65.2 kDa protein in THR4-... 29 6.6
sp|P49263|PXN1_XENLA Pentraxin fusion protein precursor 29 6.6
sp|Q5DX34|RPGRH_CAEEL X-linked retinitis pigmentosa GTPase ... 29 8.6
sp|Q9Y2G3|AT11B_HUMAN Probable phospholipid-transporting AT... 29 8.6
>sp|Q8Y9G3|HIS5_LISMO Imidazole glycerol phosphate synthase subunit hisH (IGP synthase
glutamine amidotransferase subunit) (IGP synthase
subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit
hisH)
Length = 208
Score = 30.8 bits (68), Expect = 2.3
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Frame = +3
Query: 33 QSSTAQPASNANDGNYDTYSHTYNYGPPTLDIDLQREYPISVVTLVNIKHCCHGNIVGAV 212
Q A P + DG Y Y H+Y P I Y I V ++N GNI GA
Sbjct: 125 QIKRATPLTKQLDGEYVYYVHSYYANCPEEYIIATSGYSIEVPGMIN-----KGNIYGAQ 179
Query: 213 ----------IELLSRSDKVLYQCGS 260
+E+L +V Y C S
Sbjct: 180 FHPEKSGQIGLEILKGFKEVTYSCKS 205
>sp|Q5I043|UBP28_MOUSE Ubiquitin carboxyl-terminal hydrolase 28 (Ubiquitin thiolesterase
28) (Ubiquitin-specific processing protease 28)
(Deubiquitinating enzyme 28)
Length = 1051
Score = 30.0 bits (66), Expect = 3.9
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Frame = +3
Query: 108 GPPTLDIDLQREYPISVVTLVNIKHCCHGNIVGAVIELLSRSDKVLY-QCGSITDIRLVY 284
G P + + +YP+ V N+ C G +V I LL V Y Q T + V
Sbjct: 305 GKPFCNNETFGQYPLQVNGYHNLDECLEGAMVEGDIALLPSDRSVKYGQERWFTKLPPVL 364
Query: 285 TFSCR----NEYASKIRVRHTRNDYIHIAELEVYTESDSDFLHS-----RKGKNDIHVAM 437
TF N+ + H + ++ I ++ Y + + S RK K +I V +
Sbjct: 365 TFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYKSKELIRSKRESVRKLKEEIQV-L 423
Query: 438 KSKFFQVLIKGNNPRR 485
+ K + + G+ P R
Sbjct: 424 QQKLERYVKYGSGPSR 439
>sp|Q96RU2|UBP28_HUMAN Ubiquitin carboxyl-terminal hydrolase 28 (Ubiquitin thiolesterase
28) (Ubiquitin-specific processing protease 28)
(Deubiquitinating enzyme 28)
Length = 1077
Score = 30.0 bits (66), Expect = 3.9
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 10/136 (7%)
Frame = +3
Query: 108 GPPTLDIDLQREYPISVVTLVNIKHCCHGNIVGAVIELLSRSDKVLY-QCGSITDIRLVY 284
G P + + +YP+ V N+ C G +V +ELL V Y Q T + V
Sbjct: 304 GKPFCNNETFGQYPLQVNGYRNLDECLEGAMVEGDVELLPSDHSVKYGQERWFTKLPPVL 363
Query: 285 TFSCR----NEYASKIRVRHTRNDYIHIAELEVYTESDSDFLHS-----RKGKNDIHVAM 437
TF N+ + H + ++ I ++ Y + + + RK K +I + +
Sbjct: 364 TFELSRFEFNQSLGQPEKIHNKLEFPQIIYMDRYMYRSKELIRNKRECIRKLKEEIKI-L 422
Query: 438 KSKFFQVLIKGNNPRR 485
+ K + + G+ P R
Sbjct: 423 QQKLERYVKYGSGPAR 438
>sp|P03243|E1BL_ADE05 E1B protein, large T-antigen
Length = 496
Score = 29.6 bits (65), Expect = 5.1
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 126 IDLQREYPISVVTLVNIKHCCHGNIVGAVIELLSRSDKVLYQCGSI 263
+ L+ + + LVNI++CC+ + GA +E + D+V ++C I
Sbjct: 178 VALRPDCKYKISKLVNIRNCCYISGNGAEVE-IDTEDRVAFRCSMI 222
>sp|P03244|E1BL_ADE02 E1B protein, large T-antigen
Length = 495
Score = 29.6 bits (65), Expect = 5.1
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 126 IDLQREYPISVVTLVNIKHCCHGNIVGAVIELLSRSDKVLYQCGSI 263
+ L+ + + LVNI++CC+ + GA +E + D+V ++C I
Sbjct: 177 VALRPDCKYKISKLVNIRNCCYISGNGAEVE-IDTEDRVAFRCSMI 221
>sp|P47486|UVRD_MYCGE Probable DNA helicase II homolog
Length = 703
Score = 29.6 bits (65), Expect = 5.1
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = -1
Query: 537 NVFICFNKSK----KQCFFNVIDEDCCLLSTLGKISTS*QHGYRFCLFLNGENQNQIRYK 370
N FI + K+K K F +++ + C LLS + ++ L ++ NQI+Y+
Sbjct: 171 NAFISYEKNKILNNKLDFHDLLIKTCNLLSNDNDLLNQWSEQFQHILVDEFQDTNQIQYE 230
Query: 369 LLIQLYVYNHFLYV 328
L+ L N L++
Sbjct: 231 LIKMLVTKNKNLFL 244
>sp|P25355|YCU4_YEAST Hypothetical 65.2 kDa protein in THR4-PWP2 intergenic region
Length = 563
Score = 29.3 bits (64), Expect = 6.6
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = -1
Query: 405 LNGENQNQIRYKLLIQLYVYNHFLYVSHEFLMRIHFYKKMYILILYQLCFHIDTELYLIS 226
L ENQ +I KLL+Q V FL+ + E+++ K +YI L L F+I +
Sbjct: 99 LAAENQ-EIPQKLLLQNLVIRGFLHATSEYVVDTPLIKHLYIACLTCL-FNIQQNYSTVD 156
Query: 225 IVTLSLPRQY 196
+ T Q+
Sbjct: 157 MTTFPALLQF 166
>sp|P49263|PXN1_XENLA Pentraxin fusion protein precursor
Length = 416
Score = 29.3 bits (64), Expect = 6.6
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Frame = +3
Query: 54 ASNANDGNYDTYSHTYNYGPPTLDIDLQREYPISVVTLVNIKHCCHGNIVGAVIEL-LSR 230
ASN +G+ HT P +D++ + + V + N CC I GA I + S+
Sbjct: 67 ASNYMEGDC---CHTEKQMHPWWQLDMKSKMRVHSVAITNRGDCCRERINGAEIRIGNSK 123
Query: 231 SDKVL--YQCGSITDIRLVYT--FSCRNEYASKIRVR-HTRNDYIHIAELEVYTE 380
+ L +CG + + T F+C+ + V R +Y+ + E++V+ +
Sbjct: 124 KEGGLNSTRCGVVFKMNYEETLSFNCKELEGRYVTVTIPDRIEYLTLCEVQVFAD 178
>sp|Q5DX34|RPGRH_CAEEL X-linked retinitis pigmentosa GTPase regulator homolog
Length = 1392
Score = 28.9 bits (63), Expect = 8.6
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 90 SHTYNYGPPTLDIDLQREYPISVVTLVNIKHCCHGNIVGAVIEL----LSRSDKVLYQCG 257
S + N P ++++L E P + L +KH GNIV L L S+ LY G
Sbjct: 988 SPSTNGSTPRVNLNLPAEIpreDLGLREVKHFLDGNIVSVACGLSHSALITSEGTLYTWG 1047
Query: 258 SITDIRL 278
D +L
Sbjct: 1048 KGLDYQL 1054
>sp|Q9Y2G3|AT11B_HUMAN Probable phospholipid-transporting ATPase IF (ATPase class I type
11B) (ATPase IR)
Length = 1177
Score = 28.9 bits (63), Expect = 8.6
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Frame = -1
Query: 378 RYKLLIQL-YVYNHFLYVSHEFLMRIHFYKKMYIL---ILYQL-CFHIDTELY------L 232
R+K L +L +V+ HF Y+ L++ FYK + + LYQ C LY L
Sbjct: 856 RFKFLSKLLFVHGHFYYIRIATLVQYFFYKNVCFITPQFLYQFYCLFSQQTLYDSVYLTL 915
Query: 231 ISIVTLSLP 205
+I SLP
Sbjct: 916 YNICFTSLP 924
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,632,099
Number of Sequences: 369166
Number of extensions: 1269340
Number of successful extensions: 3256
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)