Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_F02
(694 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 341 9e-94
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 341 1e-93
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 340 2e-93
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 340 2e-93
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 339 4e-93
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 337 2e-92
sp|P10096|G3P_BOVIN Glyceraldehyde-3-phosphate dehydrogenas... 336 3e-92
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 335 9e-92
sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenas... 335 9e-92
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 333 3e-91
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 341 bits (875), Expect = 9e-94
Identities = 166/230 (72%), Positives = 192/230 (83%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
V A NDPF++L+YMVYMF+YDSTHGKFHG V+A++GKLV++G A++++ +R+P I W
Sbjct: 28 VVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGD 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPS DAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSXDAPMFVMGVNHEKYDNSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDI 256
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 341 bits (874), Expect = 1e-93
Identities = 165/230 (71%), Positives = 192/230 (83%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
+ A NDPF++L+YMVYMF+YDSTHGKFHG V+A++GKLV++G A++++ +R+P I W
Sbjct: 28 IVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGD 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGATYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDI 256
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 340 bits (873), Expect = 2e-93
Identities = 165/230 (71%), Positives = 192/230 (83%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
+ A NDPF++L YMVYMF+YDSTHGKFHG V+A++GKLV++G ++S++ +R+P I W
Sbjct: 28 IVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGKSISIFQERDPANIKWGD 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS K+WRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDI 256
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 340 bits (872), Expect = 2e-93
Identities = 165/230 (71%), Positives = 192/230 (83%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
+ A NDPF++L+YMVYMF+YDSTHGKFHG V+A++GKLV++G A++++ +R+P I W
Sbjct: 17 IVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGD 76
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AKKV+ISAPSADAPMFVMGVNHEKY+ +L IVS
Sbjct: 77 AGAEYVVESTGVFTTMEKAGAHLKGG-AKKVIISAPSADAPMFVMGVNHEKYNNTLKIVS 135
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 136 NASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 195
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYDEI
Sbjct: 196 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDEI 245
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 339 bits (870), Expect = 4e-93
Identities = 165/230 (71%), Positives = 191/230 (83%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
+ A NDPF++L YMVYMF+YDSTHGKFHG V+A++GKLV++G ++++ +R+P I W
Sbjct: 28 IVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGKPITIFQERDPANIKWGD 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+KAAKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDI 256
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 337 bits (864), Expect = 2e-92
Identities = 165/230 (71%), Positives = 190/230 (82%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
V A NDPF++L YMVYMFKYDSTHG F G V+A++GKLV++GHA++++ +R+P I W
Sbjct: 28 VVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKAENGKLVINGHAITIFQERDPSNIKWAD 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDKSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDI 256
>sp|P10096|G3P_BOVIN Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 320
Score = 336 bits (862), Expect = 3e-92
Identities = 163/230 (70%), Positives = 192/230 (83%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
+ A NDPF++L+YMVYMF+YDSTHGKF+G V+A++GKLV++G A++++ +R+P I W
Sbjct: 27 IVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKAENGKLVINGKAITIFQERDPANIKWGD 86
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKY+ +L IVS
Sbjct: 87 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYNNTLKIVS 145
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 146 NASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 205
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYDEI
Sbjct: 206 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDEI 255
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 335 bits (858), Expect = 9e-92
Identities = 164/230 (71%), Positives = 190/230 (82%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
V A NDPF++L YMVYMFKYDSTHG F G V+A++GKLV++G+A++++ +R+P I W
Sbjct: 28 VVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKAENGKLVINGNAITIFQERDPSNIKWGD 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDKSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDI 256
>sp|O57479|G3P_COLLI Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 335 bits (858), Expect = 9e-92
Identities = 164/230 (71%), Positives = 190/230 (82%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
V A NDPF++L YMVYMFKYDSTHG F G V+A++GKLV++G+A++++ +R+P I W
Sbjct: 28 VVAINDPFIDLNYMVYMFKYDSTHGHFRGTVKAENGKLVINGNAITIFQERDPSNIKWAD 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDKSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDI 256
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 333 bits (853), Expect = 3e-91
Identities = 162/230 (70%), Positives = 190/230 (82%)
Frame = +1
Query: 4 VAASNDPFLELYYMVYMFKYDSTHGKFHGHVEAKDGKLVVDGHAMSVYNKRNPDEIPWDH 183
+ A NDPF++L YMVYMF+YDSTHGKF+G V+A++GKLV++G ++++ +R+P I W
Sbjct: 28 IVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKPITIFQERDPTNIKWGE 87
Query: 184 DHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSLSIVS 363
YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL IVS
Sbjct: 88 AGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSLKIVS 146
Query: 364 NASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQNIIP 543
NASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQNIIP
Sbjct: 147 NASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIP 206
Query: 544 XXXXXXXXXXXXIPELNGKITGMAFRVPVPDVSVVDLTCKLKKAAKYDEI 693
IPELNGK+TGMAFRVP P+VSVVDLTC+L+K AKYD+I
Sbjct: 207 ASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDI 256
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,882,776
Number of Sequences: 369166
Number of extensions: 1788970
Number of successful extensions: 4773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4415
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)