Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E21
(809 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 490 e-138
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 489 e-138
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 489 e-138
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 489 e-138
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 488 e-138
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 487 e-137
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 487 e-137
sp|P02550|TBA_PIG Tubulin alpha chain 486 e-137
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 485 e-137
sp|P08537|TBA_XENLA Tubulin alpha chain 485 e-137
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 490 bits (1262), Expect = e-138
Identities = 240/262 (91%), Positives = 246/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
+GQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 IGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+DLVLDRIRKLADQ
Sbjct: 69 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSI
Sbjct: 129 CTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 34.3 bits (77), Expect = 0.41
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPLATYAPVISA
Sbjct: 264 RIHFPLATYAPVISA 278
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 489 bits (1260), Expect = e-138
Identities = 240/262 (91%), Positives = 246/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE++D+VLDRIRKLADQ
Sbjct: 69 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSI
Sbjct: 129 CTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 34.3 bits (77), Expect = 0.41
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPLATYAPVISA
Sbjct: 264 RIHFPLATYAPVISA 278
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 489 bits (1260), Expect = e-138
Identities = 241/262 (91%), Positives = 246/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ
Sbjct: 69 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPL TYAPVISA
Sbjct: 264 RIHFPLVTYAPVISA 278
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 489 bits (1259), Expect = e-138
Identities = 240/262 (91%), Positives = 246/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ
Sbjct: 69 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPL TYAPVISA
Sbjct: 264 RIHFPLVTYAPVISA 278
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 488 bits (1256), Expect = e-138
Identities = 239/262 (91%), Positives = 246/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR+RKL+DQ
Sbjct: 69 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPL TYAPVISA
Sbjct: 264 RIHFPLVTYAPVISA 278
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 487 bits (1254), Expect = e-137
Identities = 237/262 (90%), Positives = 246/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQ
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 34.3 bits (77), Expect = 0.41
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPLATYAPVISA
Sbjct: 264 RIHFPLATYAPVISA 278
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 487 bits (1253), Expect = e-137
Identities = 240/262 (91%), Positives = 245/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD
Sbjct: 69 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADL 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 34.3 bits (77), Expect = 0.41
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPLATYAPVISA
Sbjct: 264 RIHFPLATYAPVISA 278
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 486 bits (1251), Expect = e-137
Identities = 236/262 (90%), Positives = 246/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQ
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGF +FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP +H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--AHFP 268
Score = 32.3 bits (72), Expect = 1.6
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
R HFPLATYAPVISA
Sbjct: 264 RAHFPLATYAPVISA 278
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 485 bits (1248), Expect = e-137
Identities = 236/262 (90%), Positives = 245/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQ
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 34.3 bits (77), Expect = 0.41
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPLATYAPVISA
Sbjct: 264 RIHFPLATYAPVISA 278
>sp|P08537|TBA_XENLA Tubulin alpha chain
Length = 449
Score = 485 bits (1248), Expect = e-137
Identities = 236/262 (90%), Positives = 245/262 (93%)
Frame = +1
Query: 1 VGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 180
VGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV
Sbjct: 9 VGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFV 68
Query: 181 DLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQ 360
DLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQ
Sbjct: 69 DLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQ 128
Query: 361 CTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSI 540
CTGLQGFL+FH LL+ERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSI
Sbjct: 129 CTGLQGFLVFHSFGGGTGSGFTSLLLERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSI 188
Query: 541 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 720
LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGAL
Sbjct: 189 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGAL 248
Query: 721 NVDLTEFQTNLVPYPESISHWP 786
NVDLTEFQTNLVPYP H+P
Sbjct: 249 NVDLTEFQTNLVPYPR--IHFP 268
Score = 34.3 bits (77), Expect = 0.41
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +3
Query: 765 RIHFPLATYAPVISA 809
RIHFPLATYAPVISA
Sbjct: 264 RIHFPLATYAPVISA 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,975,172
Number of Sequences: 369166
Number of extensions: 1903694
Number of successful extensions: 5803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5486
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)