Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E20
(800 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 505 e-143
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 505 e-143
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 505 e-143
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 504 e-143
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 504 e-142
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 503 e-142
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 502 e-142
sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-... 502 e-142
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 502 e-142
sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6) 501 e-142
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 505 bits (1301), Expect = e-143
Identities = 250/266 (93%), Positives = 253/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPL TYAPVISAEKAYHEQLSVAEIT
Sbjct: 267 FPLVTYAPVISAEKAYHEQLSVAEIT 292
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 505 bits (1301), Expect = e-143
Identities = 249/266 (93%), Positives = 254/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYT+GKEI+DLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPLATYAPVISAEKAYHEQL+VAEIT
Sbjct: 267 FPLATYAPVISAEKAYHEQLTVAEIT 292
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 505 bits (1300), Expect = e-143
Identities = 249/266 (93%), Positives = 253/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKT+GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPL TYAPVISAEKAYHEQLSVAEIT
Sbjct: 267 FPLVTYAPVISAEKAYHEQLSVAEIT 292
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 504 bits (1299), Expect = e-143
Identities = 247/266 (92%), Positives = 254/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPLATYAPVISAEKAYHEQLSVAEIT
Sbjct: 267 FPLATYAPVISAEKAYHEQLSVAEIT 292
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 504 bits (1298), Expect = e-142
Identities = 250/266 (93%), Positives = 253/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD CTGLQGFLIFH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPLATYAPVISAEKAYHEQLSVAEIT
Sbjct: 267 FPLATYAPVISAEKAYHEQLSVAEIT 292
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 503 bits (1295), Expect = e-142
Identities = 247/266 (92%), Positives = 254/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYT+GKE++D+VLDRIRKLADQCTGLQGFLIFH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPLATYAPVISAEKAYHEQL+V+EIT
Sbjct: 267 FPLATYAPVISAEKAYHEQLTVSEIT 292
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 502 bits (1293), Expect = e-142
Identities = 246/266 (92%), Positives = 253/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPLATYAPVISAEKAYHEQLSVAEIT
Sbjct: 267 FPLATYAPVISAEKAYHEQLSVAEIT 292
>sp|Q5R1W4|TBAK_PANTR Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
Length = 451
Score = 502 bits (1293), Expect = e-142
Identities = 246/266 (92%), Positives = 253/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPLATYAPVISAEKAYHEQLSVAEIT
Sbjct: 267 FPLATYAPVISAEKAYHEQLSVAEIT 292
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 502 bits (1292), Expect = e-142
Identities = 247/266 (92%), Positives = 252/266 (94%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR+RKL+DQCTGLQGFLIFH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPL TYAPVISAEKAYHE LSVAEIT
Sbjct: 267 FPLVTYAPVISAEKAYHEMLSVAEIT 292
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
Length = 451
Score = 501 bits (1290), Expect = e-142
Identities = 245/266 (92%), Positives = 253/266 (95%)
Frame = +3
Query: 3 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 182
EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTV+DEVRTGTYRQL
Sbjct: 27 EHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHXXXXXXX 362
FHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 87 FHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTG 146
Query: 363 XXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDCAFMVDN 542
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDCAFMVDN
Sbjct: 147 SGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDN 206
Query: 543 EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 722
EAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH
Sbjct: 207 EAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIH 266
Query: 723 FPLATYAPVISAEKAYHEQLSVAEIT 800
FPLATYAPVISAEKAYHEQLSV+EIT
Sbjct: 267 FPLATYAPVISAEKAYHEQLSVSEIT 292
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,006,982
Number of Sequences: 369166
Number of extensions: 1659537
Number of successful extensions: 4767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4641
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)