Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E19
(163 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23496|LACXP_LACLA LacX protein, plasmid 28 8.6
sp|P42096|LACXC_LACLA Protein lacX, chromosomal 28 8.6
>sp|P23496|LACXP_LACLA LacX protein, plasmid
Length = 299
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 102 TFFLNENSE*LDNYFYKFE 46
TF + N+E LDNY Y+FE
Sbjct: 96 TFSIKPNAEMLDNYLYQFE 114
>sp|P42096|LACXC_LACLA Protein lacX, chromosomal
Length = 299
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 102 TFFLNENSE*LDNYFYKFE 46
TF + N+E LDNY Y+FE
Sbjct: 96 TFSIKPNAEMLDNYLYQFE 114
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,780,625
Number of Sequences: 369166
Number of extensions: 199217
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 68,354,980
effective HSP length: 26
effective length of database: 63,551,870
effective search space used: 1715900490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)