Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E13
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q64060|DDX4_RAT DEAD-box protein 4 (VASA homolog) (rVLG) 36 0.024
sp|Q61496|DDX4_MOUSE DEAD-box protein 4 (VASA homolog) (Mvh) 35 0.040
sp|Q9NQI0|DDX4_HUMAN DEAD-box protein 4 (VASA homolog) 32 0.58
sp|Q6GWX0|DDX4_PIG DEAD-box protein 4 (VASA homolog) (VASA-... 32 0.58
sp|Q4R5S7|DDX4_MACFA DEAD-box protein 4 32 0.58
sp|P09052|VASA_DROME Vasa protein (Antigen Mab46F11) 31 0.76
sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DE... 29 3.8
sp|P16042|NEU4_ONCKE Vasotocin-neurophysin VT 2 precursor [... 28 4.9
sp|Q9JIB4|TF2H2_MOUSE TFIIH basal transcription factor comp... 28 6.5
sp|Q9CM18|SPRT_PASMU Protein sprT 28 8.4
>sp|Q64060|DDX4_RAT DEAD-box protein 4 (VASA homolog) (rVLG)
Length = 713
Score = 36.2 bits (82), Expect = 0.024
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = +2
Query: 2 DEDKDVALAPRFVKILKDAGQECPNWLESLC-SGYRPSEHNRNRR-------DYRKNVE 154
D + D LA VK+L DA Q+ P WLE + S Y P + + R D RKN +
Sbjct: 630 DTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYAPPSFSNSTRGAVFASFDTRKNFQ 688
>sp|Q61496|DDX4_MOUSE DEAD-box protein 4 (VASA homolog) (Mvh)
Length = 702
Score = 35.4 bits (80), Expect = 0.040
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Frame = +2
Query: 2 DEDKDVALAPRFVKILKDAGQECPNWLESLC-SGYRPSEHNRNRR--------DYRKNVE 154
D D D LA VK+L DA Q+ P WLE + S Y P + + R D RKN +
Sbjct: 618 DTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFSTYVPPSFSSSTRGGAVFASVDTRKNYQ 677
>sp|Q9NQI0|DDX4_HUMAN DEAD-box protein 4 (VASA homolog)
Length = 724
Score = 31.6 bits (70), Expect = 0.58
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 DEDKDVALAPRFVKILKDAGQECPNWLESLC-SGYRPSEHNRNRRDYRKNVES 157
D + D LA VK+L DA Q+ P WLE + S Y P R + +V++
Sbjct: 645 DLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDT 697
>sp|Q6GWX0|DDX4_PIG DEAD-box protein 4 (VASA homolog) (VASA-like protein)
Length = 722
Score = 31.6 bits (70), Expect = 0.58
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 DEDKDVALAPRFVKILKDAGQECPNWLESLC-SGYRPSEHNRNRRDYRKNVES 157
D + D LA VK+L DA Q+ P WLE + S Y P R + +V++
Sbjct: 643 DLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDT 695
>sp|Q4R5S7|DDX4_MACFA DEAD-box protein 4
Length = 725
Score = 31.6 bits (70), Expect = 0.58
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 DEDKDVALAPRFVKILKDAGQECPNWLESLC-SGYRPSEHNRNRRDYRKNVES 157
D + D LA VK+L DA Q+ P WLE + S Y P R + +V++
Sbjct: 646 DLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDT 698
>sp|P09052|VASA_DROME Vasa protein (Antigen Mab46F11)
Length = 661
Score = 31.2 bits (69), Expect = 0.76
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +2
Query: 2 DEDKDVALAPRFVKILKDAGQECPNWLESLCSGYRPSEHNRN 127
D +KD A+A VKIL+ +GQ P++L + +G N+N
Sbjct: 594 DPEKDRAIAADLVKILEGSGQTVPDFLRTCGAGGDGGYSNQN 635
>sp|Q62095|DDX3Y_MOUSE DEAD-box protein 3, Y-chromosomal (DEAD-box RNA helicase DEAD2)
(mDEAD2) (D1Pas1-related sequence 1)
Length = 658
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 11/62 (17%)
Frame = +2
Query: 8 DKDVALAPRFVKILKDAGQECPNWLESLC--SGYRPSEHNRNR---------RDYRKNVE 154
++++ + + +L +A QE P+WLES+ Y+ S R++ RDYR++
Sbjct: 546 ERNLNITKDLLDLLVEAKQEVPSWLESMAYEHHYKGSSRGRSKSRFSGGFGARDYRQSSG 605
Query: 155 SS 160
S+
Sbjct: 606 SA 607
>sp|P16042|NEU4_ONCKE Vasotocin-neurophysin VT 2 precursor [Contains: Vasotocin (VT);
Neurophysin VT 2]
Length = 158
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Frame = +1
Query: 10 QGCCISSKVC-KNS*GCWTGMPELAREF 90
QG C +C GCW G PE AR F
Sbjct: 49 QGHCFGPSICCGEGLGCWMGSPETARCF 76
>sp|Q9JIB4|TF2H2_MOUSE TFIIH basal transcription factor complex p44 subunit (Basic
transcription factor 2 44 kDa subunit) (BTF2-p44)
(General transcription factor IIH polypeptide 2)
Length = 396
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = -1
Query: 212 IKKNHHHLRAQIYFQQMLTIQHFYGSPFCFGC 117
+ +++HHL FQ+ ++++ + G FC+GC
Sbjct: 319 LARSYHHLFPLDAFQE-ISLEEYKGERFCYGC 349
>sp|Q9CM18|SPRT_PASMU Protein sprT
Length = 165
Score = 27.7 bits (60), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 135 TTVKMLNRQHLLKINLCTQMMMIFFNRSFDSMKNH 239
T ++ LNRQ K+ C Q+ +FNR+F H
Sbjct: 5 TQLRHLNRQVQRKLTQCLQLASGYFNRTFSMPTVH 39
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,088,034
Number of Sequences: 369166
Number of extensions: 648879
Number of successful extensions: 1562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1562
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)