Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E10
(848 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release facto... 355 9e-98
sp|P35615|ERF1_XENLA Eukaryotic peptide chain release facto... 353 3e-97
sp|P62498|ERF1_XENTR Eukaryotic peptide chain release facto... 353 4e-97
sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release facto... 352 7e-97
sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release facto... 348 1e-95
sp|Q5R4C7|ERF1_PONPY Eukaryotic peptide chain release facto... 345 7e-95
sp|O59948|ERF1_PODAN Eukaryotic peptide chain release facto... 329 5e-90
sp|O16520|ERF1_CAEEL Eukaryotic peptide chain release facto... 323 3e-88
sp|P12385|ERF1_YEAST Eukaryotic peptide chain release facto... 312 9e-85
sp|Q5CG95|ERF1_CRYHO Eukaryotic peptide chain release facto... 311 1e-84
>sp|Q9GR88|ERF1_POLMI Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 435
Score = 355 bits (911), Expect = 9e-98
Identities = 176/266 (66%), Positives = 211/266 (79%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSALRFARLR+EKRHNYVRKVAETAVQ+FITND+ NV G+VLA
Sbjct: 168 VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFITNDRPNVTGLVLA 227
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK EL +SDMFD RL K+LK VDVSYGGE GFNQAIELSA+ L+NVKFIQE+KLI
Sbjct: 228 GSADFKTELSQSDMFDQRLQVKILKLVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLI 287
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
R+FDEI Q+TG++CFGV+DT++ LEMGAVE LIVWENL RY L+N++T E L L+
Sbjct: 288 GRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFLK 347
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
P+Q+K++ HF DK T + YK +G+ LEIV+D+S EGSQFVKGFG
Sbjct: 348 PDQEKDKTHFTDKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFG 407
Query: 721 GIGGILRYKVDFQDMGNDILNDQEED 798
GIGG+LRY++DFQ M ND + D
Sbjct: 408 GIGGMLRYRIDFQGME---FNDDDPD 430
>sp|P35615|ERF1_XENLA Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1) (Omnipotent suppressor
protein 1 homolog) (SUP1 homolog)
Length = 437
Score = 353 bits (906), Expect = 3e-97
Identities = 180/270 (66%), Positives = 213/270 (78%), Gaps = 2/270 (0%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSALRFARLR+EKRHNYVRKVAETAVQ+FI+ DKVNV G+VLA
Sbjct: 168 VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLA 227
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK EL +SDMFD RL +KVLK VD+SYGGE GFNQAIELS + L+NVKFIQE+KLI
Sbjct: 228 GSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLI 287
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
R+FDEI Q+TG++CFGVEDT++ LEMGAVE LIV+ENL RY LR N + E L L
Sbjct: 288 GRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDTMRYVLRCNGSEEEKTLYLT 347
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
PEQ+K+++HF+DK T YK +GA LEIV+DKS EGSQFVKGFG
Sbjct: 348 PEQEKDKSHFIDKETGQEHELIESMPLLEWFANSYKKFGATLEIVTDKSQEGSQFVKGFG 407
Query: 721 GIGGILRYKVDFQDMGNDILNDQ--EEDDF 804
GIGGILRY+VDFQ M ++D+ + DD+
Sbjct: 408 GIGGILRYRVDFQGMDYQGVDDEFFDLDDY 437
>sp|P62498|ERF1_XENTR Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 437
Score = 353 bits (905), Expect = 4e-97
Identities = 177/255 (69%), Positives = 206/255 (80%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSALRFARLR+EKRHNYVRKVAETAVQ+FI+ DKVNV G+VLA
Sbjct: 168 VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLA 227
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK EL +SDMFD RL +KVLK VD+SYGGE GFNQAIELS + L+NVKFIQE+KLI
Sbjct: 228 GSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLI 287
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
R+FDEI Q+TG++CFGVEDT++ LEMGAVE LIV+ENL + RY LR N + E L L
Sbjct: 288 GRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLRCNGSEEEKTLYLT 347
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
PEQ+K+++HF+DK T YK +GA LEIV+DKS EGSQFVKGFG
Sbjct: 348 PEQEKDKSHFIDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFG 407
Query: 721 GIGGILRYKVDFQDM 765
GIGGILRY+VDFQ M
Sbjct: 408 GIGGILRYRVDFQGM 422
>sp|Q9VPH7|ERF1_DROME Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 438
Score = 352 bits (903), Expect = 7e-97
Identities = 176/267 (65%), Positives = 213/267 (79%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSALRFARLR+EKRHNYVRKVAE A Q+FITNDK N+ G++LA
Sbjct: 168 VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFITNDKPNIAGLILA 227
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK EL +SDMFD RL +KV+K VDVSYGGE GFNQAIEL+A+SL NVKFIQE+KLI
Sbjct: 228 GSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLI 287
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNN-STAETTELIL 537
R+FDEI Q+TG++CFGVEDT+R LE+G+VETLI WENL + RY L+N+ ++ TT L L
Sbjct: 288 GRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHL 347
Query: 538 RPEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGF 717
PEQ+K+++HF DK + + YK +GA LEI++DKS EGSQFV+GF
Sbjct: 348 TPEQEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGF 407
Query: 718 GGIGGILRYKVDFQDMGNDILNDQEED 798
GGIGGILRYKVDFQ M D L++ D
Sbjct: 408 GGIGGILRYKVDFQSMQLDELDNDGFD 434
>sp|Q8BWY3|ERF1_MOUSE Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
sp|P62497|ERF1_RABIT Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
sp|P62496|ERF1_MESAU Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1) (Cl1 protein)
sp|P62495|ERF1_HUMAN Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1) (TB3-1) (Cl1 protein)
sp|Q5U2Q7|ERF1_RAT Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 437
Score = 348 bits (893), Expect = 1e-95
Identities = 176/255 (69%), Positives = 203/255 (79%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSALRFARLR+EKRHNYVRKVAETAVQ+FI+ DKVNV G+VLA
Sbjct: 168 VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLA 227
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK EL +SDMFD RL +KVLK VD+SYGGE GFNQAIELS + L+NVKFIQE+KLI
Sbjct: 228 GSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLI 287
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
R+FDEI Q+TG++CFGVEDT++ LEMGAVE LIV+ENL + RY L T E L L
Sbjct: 288 GRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLT 347
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
PEQ+K+++HF DK T YK +GA LEIV+DKS EGSQFVKGFG
Sbjct: 348 PEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFG 407
Query: 721 GIGGILRYKVDFQDM 765
GIGGILRY+VDFQ M
Sbjct: 408 GIGGILRYRVDFQGM 422
>sp|Q5R4C7|ERF1_PONPY Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 437
Score = 345 bits (886), Expect = 7e-95
Identities = 175/255 (68%), Positives = 202/255 (79%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSALRFARLR+EKRHNYVRKVAETAVQ+FI+ DKVNV G+VLA
Sbjct: 168 VLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLA 227
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK EL +SDMFD RL +KVLK VD+SYGGE GFNQAIELS + L+NVKFIQE+KLI
Sbjct: 228 GSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLI 287
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
R+F EI Q+TG++CFGVEDT++ LEMGAVE LIV+ENL + RY L T E L L
Sbjct: 288 GRYFGEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLT 347
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
PEQ+K+++HF DK T YK +GA LEIV+DKS EGSQFVKGFG
Sbjct: 348 PEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFG 407
Query: 721 GIGGILRYKVDFQDM 765
GIGGILRY+VDFQ M
Sbjct: 408 GIGGILRYRVDFQGM 422
>sp|O59948|ERF1_PODAN Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 435
Score = 329 bits (844), Expect = 5e-90
Identities = 170/267 (63%), Positives = 204/267 (76%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
I+HKFSVDLPKKHGRGGQSALRFARLR EKRHNYVRKVAE AVQ FITNDKVNV GIVLA
Sbjct: 169 IVHKFSVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAELAVQNFITNDKVNVMGIVLA 228
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFKN+L+ SDMFD RL KV+K VDVSYGGE GFNQAIEL++++L NVKFIQE+KLI
Sbjct: 229 GSADFKNDLNASDMFDQRLATKVIKVVDVSYGGENGFNQAIELASETLGNVKFIQEKKLI 288
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
++F+EI Q+TGR C+GVEDT++ LE+GAVETLIV+ENL V R+ L++++ AE +
Sbjct: 289 GKYFEEISQDTGRICYGVEDTLKALELGAVETLIVFENLEVTRWVLKDSNGAEIIIHSTK 348
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
+ R F+DK T YKD+G LE VSD+S EG+QFVKGFG
Sbjct: 349 QQDAANRDRFMDKETGQEMEVVSQESFLEWIAEHYKDFGTTLEFVSDRSTEGNQFVKGFG 408
Query: 721 GIGGILRYKVDFQDMGNDILNDQEEDD 801
GIGGILRYKV+F+ LN+ ++DD
Sbjct: 409 GIGGILRYKVNFEQ-----LNEVDDDD 430
>sp|O16520|ERF1_CAEEL Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 443
Score = 323 bits (829), Expect = 3e-88
Identities = 163/269 (60%), Positives = 207/269 (76%), Gaps = 1/269 (0%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSA+RFARLR EKRHNYVRKVAE +V+ FI NDKV V G++LA
Sbjct: 176 VLHKFTVDLPKKHGRGGQSAVRFARLRNEKRHNYVRKVAENSVEQFIKNDKVTVAGLILA 235
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK EL +SDMFD RL AK++K VD++YGGE GFNQAIEL+AD+LA+VKFIQE+KLI
Sbjct: 236 GSADFKTELGQSDMFDQRLQAKMIKTVDIAYGGENGFNQAIELAADTLASVKFIQEKKLI 295
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
+FDEI Q+TG++ FGV+DT+ LEMGA+ETLI WENL + RY ++ NS E L LR
Sbjct: 296 GGYFDEISQDTGKYVFGVKDTLAALEMGAIETLICWENLDIVRYKMK-NSLGEDILLNLR 354
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
P+++K+++HF D T YK++GA LEIV+DKS EG+QFV+GFG
Sbjct: 355 PDEEKDKSHFTDSETGQDMEIIETMPLLEWFANNYKNFGAALEIVTDKSQEGAQFVRGFG 414
Query: 721 GIGGILRYKVDFQDMG-NDILNDQEEDDF 804
GIGG+LRY+VD + D L++ + DD+
Sbjct: 415 GIGGLLRYRVDLAHVDLEDELDNIDLDDY 443
>sp|P12385|ERF1_YEAST Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1) (Omnipotent suppressor
protein 1)
Length = 437
Score = 312 bits (799), Expect = 9e-85
Identities = 158/269 (58%), Positives = 206/269 (76%), Gaps = 1/269 (0%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+LHKF+VDLPKKHGRGGQSALRFARLR EKRHNYVRKVAE AVQ FITNDKVNV+G++LA
Sbjct: 165 VLHKFTVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAEVAVQNFITNDKVNVKGLILA 224
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFK +L +S++FD RL KV+ VDVSYGGE GFNQAIELSA++LANVK++QE+KL+
Sbjct: 225 GSADFKTDLAKSELFDPRLACKVISIVDVSYGGENGFNQAIELSAEALANVKYVQEKKLL 284
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
+ +FDEI Q+TG+FC+G++DT++ L++GAVE LIV+ENL RYT ++ AE E+I
Sbjct: 285 EAYFDEISQDTGKFCYGIDDTLKALDLGAVEKLIVFENLETIRYTFKD---AEDNEVIKF 341
Query: 541 PE-QKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGF 717
E + K+++ +DK T YK++GA LE ++DKS+EG+QFV GF
Sbjct: 342 AEPEAKDKSFAIDKATGQEMDVVSEEPLIEWLAANYKNFGATLEFITDKSSEGAQFVTGF 401
Query: 718 GGIGGILRYKVDFQDMGNDILNDQEEDDF 804
GGIG +LRYKV+F+ L D+ ED++
Sbjct: 402 GGIGAMLRYKVNFEQ-----LVDESEDEY 425
>sp|Q5CG95|ERF1_CRYHO Eukaryotic peptide chain release factor subunit 1 (eRF1)
(Eukaryotic release factor 1)
Length = 429
Score = 311 bits (797), Expect = 1e-84
Identities = 153/254 (60%), Positives = 193/254 (75%)
Frame = +1
Query: 1 ILHKFSVDLPKKHGRGGQSALRFARLRVEKRHNYVRKVAETAVQMFITNDKVNVEGIVLA 180
+L +F+VDLPKKHGRGGQSALRFARLR+EKRHNY+RKVAETA MFITND+VNV ++LA
Sbjct: 164 VLLRFNVDLPKKHGRGGQSALRFARLRMEKRHNYLRKVAETATTMFITNDQVNVAALILA 223
Query: 181 GSADFKNELHESDMFDLRLLAKVLKKVDVSYGGEQGFNQAIELSADSLANVKFIQEQKLI 360
GSADFKNEL +SD+FD RL +K+LK VDVSYGG+ GFNQAIELS+D+L NVKF+QE+KLI
Sbjct: 224 GSADFKNELAQSDIFDQRLASKILKIVDVSYGGDNGFNQAIELSSDALQNVKFVQEKKLI 283
Query: 361 KRFFDEIHQNTGRFCFGVEDTVRGLEMGAVETLIVWENLAVCRYTLRNNSTAETTELILR 540
+FFDE+ Q+TG++ +G+ +T++ LEMGA+E LIVWENL R ++N ST E +
Sbjct: 284 TKFFDEVAQDTGKYVYGINETLQALEMGAIELLIVWENLETKRMVVKNPSTGEEKVFLNS 343
Query: 541 PEQKKERAHFLDKTTNIXXXXXXXXXXXXXXXXKYKDYGAILEIVSDKSAEGSQFVKGFG 720
P ++ + + F D T Y++YGA LE V++KS EG+QF KGFG
Sbjct: 344 PTEQHDESKFKDPETGAELDVIEILPLTEWLVNTYQNYGAQLEFVTNKSQEGNQFQKGFG 403
Query: 721 GIGGILRYKVDFQD 762
G GGILRYKVDFQD
Sbjct: 404 GFGGILRYKVDFQD 417
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,532,342
Number of Sequences: 369166
Number of extensions: 1466907
Number of successful extensions: 3813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3766
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)