Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E04
(928 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P56958|RNB_HHV1M RNA-binding protein (Vmw21) 51 4e-06
sp|P04487|RNB_HHV11 RNA-binding protein (Vmw21) 50 7e-06
sp|P27951|BAG_STRAG IgA FC receptor precursor (Beta antigen... 50 1e-05
sp|P16053|NFM_CHICK Neurofilament triplet M protein (160 kD... 49 2e-05
sp|Q96P26|5NT1B_HUMAN Cytosolic 5'-nucleotidase 1B (Cytosol... 49 3e-05
sp|Q8BP27|CJ078_MOUSE Protein C10orf78 homolog 48 4e-05
sp|P89479|RNB_HHV2H Probable RNA-binding protein 47 8e-05
sp|Q9P7E8|APP1_SCHPO Protein app1 47 8e-05
sp|Q7Z7G0|TARSH_HUMAN Target of Nesh-SH3 precursor (Tarsh) ... 45 2e-04
sp|Q5AUG9|CWC27_EMENI Peptidyl-prolyl isomerase cwc27 45 3e-04
>sp|P56958|RNB_HHV1M RNA-binding protein (Vmw21)
Length = 161
Score = 51.2 bits (121), Expect = 4e-06
Identities = 31/87 (35%), Positives = 44/87 (50%)
Frame = +3
Query: 198 KPASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQ 377
+P ++P P+ P PR+P+P R P+ +SR P+ PR P+ SPR P+
Sbjct: 80 RPPTIPRTPRVpre-----PRVPRPpreprePRVPRASRDPRVPRDPRDPRQPRSprePR 134
Query: 378 PLASPRIPKSLSSPRTPKVTPSPGPQR 458
SPR P+ PRTP+ T P R
Sbjct: 135 ---SprePRPprePRTPRTTREPRTAR 158
Score = 48.1 bits (113), Expect = 3e-05
Identities = 27/79 (34%), Positives = 40/79 (50%)
Frame = +3
Query: 237 SSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSS 416
S V P +P+ + RVP+ R P+ PR+P+ PR+P+ PR P+S
Sbjct: 76 SEAVRPPTIPR---TPRVprePRVPRPpreprePRVPRASRDPRVPRDPRDPRQPRSpre 132
Query: 417 PRTPKVTPSPGPQRKSRIP 473
PR+P+ P P R+ R P
Sbjct: 133 PRSPR---EPRPprePRTP 148
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 261 LPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTP 440
+ +P + R P + R+P+ PR P+ PR+P+ PR+P+ PR P+
Sbjct: 72 ISKPSEAVRPPTIPRTPRVprePRVPRPpreprePRVPRASRDPRVPRDPRDPRQPRSPR 131
Query: 441 SPGPQRKSRIP 473
P R+ R P
Sbjct: 132 EPRSprePRPP 142
Score = 30.8 bits (68), Expect = 5.6
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +3
Query: 285 RVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKS 464
RV T S+ + + P IP+ PR P+ PR P+ PR P+ + P R
Sbjct: 65 RVGADTTISKPSEAVRPPTIPRTPRVprePRVPRPprepre---PRVPRASRDPRVPRDP 121
Query: 465 RIP 473
R P
Sbjct: 122 RDP 124
>sp|P04487|RNB_HHV11 RNA-binding protein (Vmw21)
Length = 161
Score = 50.4 bits (119), Expect = 7e-06
Identities = 32/89 (35%), Positives = 46/89 (51%)
Frame = +3
Query: 198 KPASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQ 377
+P ++P P+ P +V PR P+ RVP++ R+P+ PR P+ SPR P+
Sbjct: 80 RPPTIPRTPRVprePRV--PRPpreprePRVPRAPRDPRVPRDPRDPRQPR---SprePR 134
Query: 378 PLASPRIPKSLSSPRTPKVTPSPGPQRKS 464
SPR P+S PRTP+ P R S
Sbjct: 135 ---SprePRSprePRTPRTprePRTARGS 160
Score = 48.9 bits (115), Expect = 2e-05
Identities = 27/79 (34%), Positives = 39/79 (49%)
Frame = +3
Query: 237 SSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSS 416
S V P +P+ + RVP+ R P+ PR+P+ PR+P+ PR P+S
Sbjct: 76 SEAVRPPTIPR---TPRVprePRVPRPpreprePRVPRAPRDPRVPRDPRDPRQPRSpre 132
Query: 417 PRTPKVTPSPGPQRKSRIP 473
PR+P+ SP R R P
Sbjct: 133 PRSprePRSprePRTPRTP 151
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3
Query: 261 LPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTP 440
+ +P + R P + R+P+ PR P+ PR+P+ PR+P+ PR P+
Sbjct: 72 ISKPSEAVRPPTIPRTPRVprePRVPRPpreprePRVPRAPRDPRVPRDPRDPRQPRSPR 131
Query: 441 SPGPQRKSRIP 473
P R+ R P
Sbjct: 132 EPRSprePRSP 142
Score = 31.6 bits (70), Expect = 3.3
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 285 RVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKS 464
RV T S+ + + P IP+ PR P+ PR P+ PR P+ P R
Sbjct: 65 RVGADTTISKPSEAVRPPTIPRTPRVprePRVPRPpreprePRVPRAPRDPRVPRDPRDP 124
Query: 465 RIP 473
R P
Sbjct: 125 RQP 127
>sp|P27951|BAG_STRAG IgA FC receptor precursor (Beta antigen) (B antigen)
Length = 1164
Score = 49.7 bits (117), Expect = 1e-05
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 147 KLQKPEGTINTMAPFRFKPASLPIAPKKPTSSKVTS-PRLPQPVTSSRVPQSLTSSRLPQ 323
K QK T P K LP AP P + P P+ + RVP+S + P
Sbjct: 817 KFQKGLETNTPETPDTPKIPELPQAPDTPQAPDTPHVPESPKAPEAPRVPESPKTPEAPH 876
Query: 324 HLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKSRIP 473
SP+ P+ +PR+P+ +P P SP+TP+ P P + +P
Sbjct: 877 VPESPKAPE---APRVPESPKTPEAPHVPESPKTPEAPKIPEPPKTPDVP 923
Score = 45.8 bits (107), Expect = 2e-04
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +3
Query: 213 PIAPKKPTSSKVTS----PRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQP 380
P AP+ P S K P P+ + RVP+S + P SP+ P+ +P+IP+P
Sbjct: 860 PEAPRVPESPKTPEAPHVPESPKAPEAPRVPESPKTPEAPHVPESPKTPE---APKIPEP 916
Query: 381 LASPRIPKSLSSPRTPKVTPSP 446
+P +PK P+ P V P
Sbjct: 917 PKTPDVPKLPDVPKLPDVPKLP 938
Score = 44.3 bits (103), Expect = 5e-04
Identities = 25/88 (28%), Positives = 43/88 (48%)
Frame = +3
Query: 210 LPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLAS 389
+P +PK P + +V P P+ + VP+S + P+ SP+ P+ +P +P+ +
Sbjct: 853 VPESPKAPEAPRV--PESPKTPEAPHVPESPKAPEAPRVPESPKTPE---APHVPESPKT 907
Query: 390 PRIPKSLSSPRTPKVTPSPGPQRKSRIP 473
P PK P+TP V P + +P
Sbjct: 908 PEAPKIPEPPKTPDVPKLPDVPKLPDVP 935
Score = 41.2 bits (95), Expect = 0.004
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +3
Query: 159 PEGTINTMAPFRFKPASLPIAPKKPTSSKVT-SPRLPQPVTSSRVPQSLTSSRLPQHLAS 335
PE AP + P AP P S K +PR+P+ + P S + P+ +
Sbjct: 854 PESPKAPEAPRVPESPKTPEAPHVPESPKAPEAPRVPESPKTPEAPHVPESPKTPE---A 910
Query: 336 PRIPQPLASPRIPQPLASPRIPKSLSSPRTPKV 434
P+IP+P +P +P+ P++P P PK+
Sbjct: 911 PKIPEPPKTPDVPKLPDVPKLPDVPKLPDAPKL 943
Score = 31.2 bits (69), Expect = 4.3
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Frame = +1
Query: 226 KSLPAPRL----QVPDYRNLSQVPEYRNLSQVPDYLNISQVPEYHSLSQVPEYHSLSQVP 393
K+ APR+ + P+ ++ + P+ +VP+ + P + PE + + P
Sbjct: 858 KAPEAPRVPESPKTPEAPHVPESPKAPEAPRVPESPKTPEAPHVPESPKTPEAPKIPEPP 917
Query: 394 EYPSLFQVPELRRLLPVQDLRESQEFQQG-KPVNKEVRHRQDINPEILV 537
+ P + ++P++ +L V L ++ + G V + V D N ++ V
Sbjct: 918 KTPDVPKLPDVPKLPDVPKLPDAPKLPDGLNKVGQAVFTSTDGNTKVTV 966
>sp|P16053|NFM_CHICK Neurofilament triplet M protein (160 kDa neurofilament protein)
(Neurofilament medium polypeptide) (NF-M)
Length = 858
Score = 48.9 bits (115), Expect = 2e-05
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Frame = +3
Query: 219 APKKPTSSKVTSPRLP----QPVTSSR--VPQSLTSSR---LPQHLASPRIPQPLASPRI 371
+P+KP + KVTSP P +P T + P+ + S P+ + SP P PR
Sbjct: 623 SPEKPATPKVTSPEKPATPEKPPTPEKAITPEKVRSPEKPTTPEKVVSPEKPASPEKPRT 682
Query: 372 PQPLASPRIPKSLSSPRTPKVTPSPGPQRKSRIP 473
P+ ASP P + PRTP+ +P R P
Sbjct: 683 PEKPASPEKPATPEKPRTPEKPATPEKPRSPEKP 716
Score = 44.3 bits (103), Expect = 5e-04
Identities = 29/106 (27%), Positives = 39/106 (36%)
Frame = +3
Query: 144 EKLQKPEGTINTMAPFRFKPASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQ 323
EK PE KPA+ K PT K +P + P+ + S P
Sbjct: 619 EKAASPEKPATPKVTSPEKPAT---PEKPPTPEKAITPEKVRSPEKPTTPEKVVSPEKPA 675
Query: 324 HLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRK 461
PR P+ ASP P PR P+ ++P P+ P K
Sbjct: 676 SPEKPRTPEKPASPEKPATPEKPRTPEKPATPEKPRSPEKPSSPLK 721
Score = 35.4 bits (80), Expect = 0.23
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Frame = +3
Query: 153 QKPEGTINTMAPFRFKPASLP------IAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSR 314
+KP + P + + P ++P+KP S + PR P+ S P + R
Sbjct: 642 EKPPTPEKAITPEKVRSPEKPTTPEKVVSPEKPASPE--KPRTPEKPASPEKPATPEKPR 699
Query: 315 LPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKSR 467
P+ A+P P+ P P + +S++ + KVT +++R
Sbjct: 700 TPEKPATPEKPRSPEKPSSPLKDEKAVVEESITVTKVTKVTAEVEVSKEAR 750
>sp|Q96P26|5NT1B_HUMAN Cytosolic 5'-nucleotidase 1B (Cytosolic 5'-nucleotidase IB) (cN1B)
(cN-IB) (Autoimmune infertility-related protein)
Length = 610
Score = 48.5 bits (114), Expect = 3e-05
Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Frame = +3
Query: 237 SSKVTSPRLPQPV---TSSRVPQSLTSSRLPQHLASPRI----PQPLASPRIPQPLASPR 395
S +P + +P TS+++P S TSSR P SP + P PL+ QP ASP+
Sbjct: 127 SPSTKAPSIDEPRSRNTSAKLPSSSTSSRTPS--TSPSLHDSSPPPLSGQPSLQPPASPQ 184
Query: 396 IPKSLSS-PRTPKVTPSPGPQRKSRIPXXXXXXXXXXXXXXXXXXDISP--ESATSPTT* 566
+P+SL S P TP P PG +R +++ D P S TSPT
Sbjct: 185 LPRSLDSRPPTPP-EPDPGSRRSTKMQENPEAWAQGIVREIRQTRDSQPLEYSRTSPTEW 243
Query: 567 INQYIYRDIYINQDNID 617
+ R IY +D
Sbjct: 244 KSSSQRRGIYPASTQLD 260
>sp|Q8BP27|CJ078_MOUSE Protein C10orf78 homolog
Length = 319
Score = 47.8 bits (112), Expect = 4e-05
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Frame = +3
Query: 129 NYELREKLQKPEGTINTMAPFRFKPASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSL-- 302
N E K++ + +T +P +P+ P +P ++ TS P P TS VPQ+
Sbjct: 6 NQEFTSKMENSSDSAST-SPDAPQPSENPPSPPTSPAAPQTSENPPSPPTSPAVPQTREN 64
Query: 303 -----TSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKS 464
TS PQ +P P P SP PQP +P P + + P+ P P P S
Sbjct: 65 PPSPPTSPAAPQpreNP--PSPPTSPAAPQpreNPPSPPTSPAAPQpreNP-PSPHSNS 120
Score = 42.7 bits (99), Expect = 0.001
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Frame = +3
Query: 201 PASLPIAPKKPTS-----SKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASP 365
P S P +P P + S TSP PQP P TS PQ +P P P SP
Sbjct: 49 PPSPPTSPAVPQTRENPPSPPTSPAAPQP--RENPPSPPTSPAAPQpreNP--PSPPTSP 104
Query: 366 RIPQPLASPRIPKSLSSPRTP 428
PQP +P P S SS + P
Sbjct: 105 AAPQpreNPPSPHSNSSGKQP 125
>sp|P89479|RNB_HHV2H Probable RNA-binding protein
Length = 151
Score = 47.0 bits (110), Expect = 8e-05
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +3
Query: 198 KPASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQ 377
+P+ +P AP+ P PR+P+ RVP+S R+P+ PR P+P PR P+
Sbjct: 85 RPSRIPRAPRVpre-----PRVpreprePRVPRSprePRVPRIPRDPRPPRPPRVprePR 139
Query: 378 PLASPRIPKSLS 413
P PR + L+
Sbjct: 140 PprePRATRGLA 151
Score = 46.6 bits (109), Expect = 1e-04
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = +3
Query: 294 QSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKSRIP 473
+++ SR+P+ +PR+P+ PR+P+ PR+P+S PR P++ P P R R+P
Sbjct: 82 EAVRPSRIPR---APRVPR---EPRVpreprePRVPRSprePRVPRIPRDPRPPRPPRVP 135
Score = 45.1 bits (105), Expect = 3e-04
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +3
Query: 255 PRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKV 434
P+ + V SR+P++ R+P+ PR P+ PR P+ PRIP+ PR P+V
Sbjct: 78 PKPSEAVRPSRIPRA---PRVprePRVpreprePRVPRSprePRVPRIPRDPRPPRPPRV 134
Query: 435 TPSPGPQRKSR 467
P P R+ R
Sbjct: 135 prePRPprePR 145
Score = 44.7 bits (104), Expect = 4e-04
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +3
Query: 255 PRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKV 434
PR P+ RVP+ R+P+ PR+P+ PR P+P PR+P+ PR P+
Sbjct: 90 PRAPRVprePRVpreprePRVPRSprePRVPRIPRDPRPPRP---PRVprePRPprePRA 146
Query: 435 T 437
T
Sbjct: 147 T 147
Score = 33.5 bits (75), Expect = 0.87
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 327 LASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKSRIP 473
L+ P+ + + RIP+ PR P+ PR P+V SP R RIP
Sbjct: 75 LSIPKPSEAVRPSRIPRAPRVprePRVpreprePRVPRSprePRVPRIP 123
Score = 30.0 bits (66), Expect = 9.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 330 ASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQRKSRIP 473
A+ IP+P + R + +PR+P+ PR P+ P R+ R+P
Sbjct: 73 AALSIPKPSEAVRPSRIPRAPRVprePRVpreprePRVPRSprePRVP 120
>sp|Q9P7E8|APP1_SCHPO Protein app1
Length = 857
Score = 47.0 bits (110), Expect = 8e-05
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 9/116 (7%)
Frame = +3
Query: 153 QKPEGTINTMAPFRFKPASLPIAPKKPTSSK-------VTSPRLPQPVTSSRVPQSLTSS 311
Q P + AP +P P+AP+ P+ + +P +PQP + VP+ +
Sbjct: 591 QPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPS-- 648
Query: 312 RLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTP--KVTPSPGPQRKSRIP 473
+PQ A P +P+ +P +PQP A+P +P+ S P+ P V P G + +P
Sbjct: 649 -VPQRPAVPVVPE---APSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVP 700
Score = 44.7 bits (104), Expect = 4e-04
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Frame = +3
Query: 153 QKPEGTINTMAPFRFKPASLPIAPKKPTSSK-------VTSPRLPQPVTSSRVPQSLTSS 311
Q P + AP +P + P+AP+ P++ + +P +PQ VP++L+
Sbjct: 516 QPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALS-- 573
Query: 312 RLPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSP 446
+PQ +P P+ P +PQP +P +P++ S P+ P +P
Sbjct: 574 -VPQPPVAPVAPE---VPSVPQPPVAPVVPEAPSVPQPPVAPVAP 614
Score = 42.7 bits (99), Expect = 0.001
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Frame = +3
Query: 186 PFRFKPASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIP----QP 353
P F + A +K V +P +PQP + VP++ + + P +P +P +P
Sbjct: 489 PKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRP 548
Query: 354 LA-----SPRIPQPLASPRIPKSLSSPRTPKVTPSP 446
A +P +PQ A P +P++LS P+ P +P
Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAP 584
Score = 41.6 bits (96), Expect = 0.003
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Frame = +3
Query: 186 PFRFKPASLPIAPKKPTSSKVTS----PRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQP 353
PF P + AP+KPTS + S P +P+ V R S + + +P +PQP
Sbjct: 460 PFTNNPNPIS-APEKPTSGESLSLNPPPAMPK-VFPERDISSASQKAAQPSVITPSVPQP 517
Query: 354 LASPRIP------QPLA---SPRIPKSLSSPRTPKVTPSPGPQRKSRIP 473
A+P +P QP A +P +P + P P V +P ++ +P
Sbjct: 518 PAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566
Score = 41.6 bits (96), Expect = 0.003
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Frame = +3
Query: 207 SLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLASPRIPQ-------PLA-- 359
S+P P P + +V P +PQP + VP++ + + P +P +P P+
Sbjct: 573 SVPQPPVAPVAPEV--PSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPE 630
Query: 360 SPRIPQPLASPRIPKSLSSPRTPKVTPSP 446
+P +PQP A+P +P+ S P+ P V P
Sbjct: 631 APSVPQPPAAPVVPEVPSVPQRPAVPVVP 659
>sp|Q7Z7G0|TARSH_HUMAN Target of Nesh-SH3 precursor (Tarsh) (Nesh binding protein)
(NeshBP) (ABI gene family member 3 binding protein)
Length = 1075
Score = 45.4 bits (106), Expect = 2e-04
Identities = 34/98 (34%), Positives = 47/98 (47%)
Frame = +3
Query: 153 QKPEGTINTMAPFRFKPASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTSSRLPQHLA 332
+ PE T T AP + + SL PK P S +VT + P P + R P P+
Sbjct: 498 KSPEPTWTTPAPGKTQFISLK--PKIPLSPEVTHTK-PAPKQTPRAPPK------PKTSP 548
Query: 333 SPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSP 446
PRIPQ P++PQ + + PK+ SP TP+P
Sbjct: 549 RPRIPQTQPVPKVPQRVTAK--PKTSPSPEVSYTTPAP 584
Score = 38.1 bits (87), Expect = 0.035
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Frame = +3
Query: 201 PASLPIAPKKPTSSKVTSPRLPQPVTSSRVPQSLTS-------------SRLPQHLASPR 341
P P AP KP +S PR+PQ +VPQ +T+ + P+ + P
Sbjct: 534 PKQTPRAPPKPKTSP--RPRIPQTQPVPKVPQRVTAKPKTSPSPEVSYTTPAPKDVLLPH 591
Query: 342 IPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQ 455
P P S P PL + I P P ++PSP +
Sbjct: 592 KPYPEVSQSEPAPLETRGI------PFIPMISPSPSQE 623
Score = 32.3 bits (72), Expect = 1.9
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 13/98 (13%)
Frame = +3
Query: 219 APKKPTSSKVTSPRLPQPVTSSRVPQSLTSSR--LPQHLASPR----IPQP------LAS 362
AP++ TS T R P+P P+ TS+ P+ SP P P
Sbjct: 459 APQQTTSIPSTPKRRPRPKPPRTKPERTTSAGTITPKISKSPEPTWTTPAPGKTQFISLK 518
Query: 363 PRIPQPLASPRIPKSLSSPR-TPKVTPSPGPQRKSRIP 473
P+IP SP + + +P+ TP+ P P + RIP
Sbjct: 519 PKIP---LSPEVTHTKPAPKQTPRAPPKPKTSPRPRIP 553
>sp|Q5AUG9|CWC27_EMENI Peptidyl-prolyl isomerase cwc27
Length = 558
Score = 45.1 bits (105), Expect = 3e-04
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Frame = +3
Query: 141 REKLQKPEGTINTMAPFRFKPASLPIAPKKPTSSK--VTSPRLPQPVTSSRVPQSLTSSR 314
++K KP + + + +PI P KP + VT +LP+ +S++ S T R
Sbjct: 214 KKKKAKPGKALLSFGGDDEEDEDMPIRPAKPKFNPMLVTDTKLPEKESSTKGEASQTRKR 273
Query: 315 LPQHLASPRIPQPLASPRIPQPLASPRIPKSLSSPRTPKVTPSPGPQR 458
P+ + R PQP A P+ P L +P +P+ +PSP P++
Sbjct: 274 -PRSPSPKRQPQPSAPPKNRPKTPEPTKQLPLPNPESPERSPSPPPKQ 320
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,820,300
Number of Sequences: 369166
Number of extensions: 2177529
Number of successful extensions: 12462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11140
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)