Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_E03
(620 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 182 6e-46
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 179 7e-45
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 177 1e-44
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 177 2e-44
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 176 3e-44
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 176 4e-44
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 176 6e-44
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 176 6e-44
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 175 1e-43
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 174 2e-43
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 182 bits (462), Expect = 6e-46
Identities = 88/159 (55%), Positives = 121/159 (76%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V +P Q T +GPEKTSFFQALQIPTKI RGTIEI+NDV LIK GD V SE+ LL
Sbjct: 117 APCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML + PF YGL ++Q+Y++G+ Y+P+ LD+T +++ + F+ + VA+VSLA+N PTLAS
Sbjct: 177 MLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
V H +AN ++ ++G++ VTD + KEAE IK ++ DP+KF
Sbjct: 237 VAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 179 bits (453), Expect = 7e-45
Identities = 91/159 (57%), Positives = 115/159 (72%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LI+ GD V SEA LL
Sbjct: 117 APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F+E + +A+V L + PTLAS
Sbjct: 177 MLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
+PH I N K V+ ++V TDY+ A+ +K +L DP++F
Sbjct: 237 IPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 177 bits (450), Expect = 1e-44
Identities = 91/159 (57%), Positives = 113/159 (71%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL
Sbjct: 117 APCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF +GL IQQ+Y+NGS YSP+ LDITED + F+E + +A+V L + PT+AS
Sbjct: 177 MLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
VPH + N K V+ L+V TDY+ A+ +K +L DP+ F
Sbjct: 237 VPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 177 bits (449), Expect = 2e-44
Identities = 87/159 (54%), Positives = 114/159 (71%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP+ V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL
Sbjct: 117 APLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF YGL + Q+Y++GS +SP+ LDI +D+ F + +AAV L++ PT+AS
Sbjct: 177 MLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
PH IAN K ++ ++ T+ KEA IKEY+KDP+KF
Sbjct: 237 APHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 176 bits (447), Expect = 3e-44
Identities = 94/162 (58%), Positives = 113/162 (69%), Gaps = 3/162 (1%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL
Sbjct: 117 APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLN 176
Query: 183 MLK---IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPT 353
ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F++ + +A+V L + PT
Sbjct: 177 MLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPT 236
Query: 354 LASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
LAS+PH I N K V+ ++V TDY AE +K YL DPT F
Sbjct: 237 LASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 176 bits (446), Expect = 4e-44
Identities = 92/159 (57%), Positives = 112/159 (70%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL
Sbjct: 117 APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+AS
Sbjct: 177 MLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
VPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 237 VPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 176 bits (445), Expect = 6e-44
Identities = 93/159 (58%), Positives = 111/159 (69%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL
Sbjct: 117 APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF +GL IQQ+++NGS YSP+ LDITE + F+E + VA+V L + PT+AS
Sbjct: 177 MLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
VPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 237 VPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 176 bits (445), Expect = 6e-44
Identities = 90/159 (56%), Positives = 113/159 (71%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD V SEA LL
Sbjct: 117 APCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + + F+E + VA+V L + PT+AS
Sbjct: 177 MLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
VPH I N K V+ ++V TDY AE +K +L DP+ F
Sbjct: 237 VPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAF 275
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 175 bits (443), Expect = 1e-43
Identities = 87/159 (54%), Positives = 113/159 (71%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP+ V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD V SEA LL
Sbjct: 117 APLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLN 176
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF YGL I Q+Y++GS +SP+ LDI +D+ F +AAVSL + PT+AS
Sbjct: 177 MLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIAS 236
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
PH IAN K ++ ++ T+ K+A IKE++KDP+KF
Sbjct: 237 APHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 174 bits (440), Expect = 2e-43
Identities = 91/159 (57%), Positives = 111/159 (69%)
Frame = +3
Query: 3 APVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVKQSEAQLLQ 182
AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK GD SEA LL
Sbjct: 108 APCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKEGASEATLLN 167
Query: 183 MLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLALNKPTLAS 362
ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA+V L + PT+AS
Sbjct: 168 MLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVAS 227
Query: 363 VPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 479
VPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 228 VPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,496,644
Number of Sequences: 369166
Number of extensions: 1148210
Number of successful extensions: 2918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2914
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)