Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D20
(298 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 k... 141 5e-34
sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 k... 140 1e-33
sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic 139 2e-33
sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 k... 139 3e-33
sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar oute... 138 4e-33
sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar ou... 137 1e-32
sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa... 137 1e-32
sp|Q9Y3P0|DYLL_HUMAN Putative dynein light chain protein DJ... 121 6e-28
sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic 120 1e-27
sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-st... 116 1e-26
>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic (8 kDa dynein light chain) (DLC8)
(DLC8b)
sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic
sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic
Length = 89
Score = 141 bits (355), Expect = 5e-34
Identities = 65/69 (94%), Positives = 67/69 (97%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
AV+CAT AMEKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct: 21 AVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
Query: 188 VAILLFKSG 214
VAILLFKSG
Sbjct: 81 VAILLFKSG 89
>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic (8 kDa dynein light chain)
Length = 89
Score = 140 bits (352), Expect = 1e-33
Identities = 64/69 (92%), Positives = 67/69 (97%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
AV+CAT A+EKYNIEKDIAAFIKKEFDK YNPTWHCIVGRNFGSYVTHET+HFIYFYLGQ
Sbjct: 21 AVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ 80
Query: 188 VAILLFKSG 214
VAILLFKSG
Sbjct: 81 VAILLFKSG 89
>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic
Length = 89
Score = 139 bits (351), Expect = 2e-33
Identities = 63/69 (91%), Positives = 67/69 (97%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
A++CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct: 21 AIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
Query: 188 VAILLFKSG 214
VAILLFKSG
Sbjct: 81 VAILLFKSG 89
>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (Cut
up protein)
Length = 89
Score = 139 bits (349), Expect = 3e-33
Identities = 63/69 (91%), Positives = 67/69 (97%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
AV+CAT A+EKYNIEKDIAA+IKKEFDK YNPTWHCIVGRNFGSYVTHET+HFIYFYLGQ
Sbjct: 21 AVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ 80
Query: 188 VAILLFKSG 214
VAILLFKSG
Sbjct: 81 VAILLFKSG 89
>sp|O02414|DYL1_ANTCR Dynein light chain LC6, flagellar outer arm
Length = 89
Score = 138 bits (347), Expect = 4e-33
Identities = 62/69 (89%), Positives = 67/69 (97%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
AV+CAT A+EK+NIEKDIAA+IKKEFDK YNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct: 21 AVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
Query: 188 VAILLFKSG 214
VA+LLFKSG
Sbjct: 81 VAVLLFKSG 89
>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm
Length = 91
Score = 137 bits (344), Expect = 1e-32
Identities = 62/69 (89%), Positives = 67/69 (97%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
AV+CAT A+EKYNIEKDIAA+IKKEFD+ +NPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct: 23 AVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 82
Query: 188 VAILLFKSG 214
VAILLFKSG
Sbjct: 83 VAILLFKSG 91
>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN) (mPIN)
sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic
sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic
sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8)
(Protein inhibitor of neuronal nitric oxide synthase)
(PIN)
Length = 89
Score = 137 bits (344), Expect = 1e-32
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
+V CAT A+EKYNIEKDIAA IKKEFDK YNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ
Sbjct: 21 SVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 80
Query: 188 VAILLFKSG 214
VAILLFKSG
Sbjct: 81 VAILLFKSG 89
>sp|Q9Y3P0|DYLL_HUMAN Putative dynein light chain protein DJ8B22.1
Length = 89
Score = 121 bits (303), Expect = 6e-28
Identities = 56/69 (81%), Positives = 60/69 (86%)
Frame = +2
Query: 8 AVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 187
+V CA A+EKYNIEKDIAA +KKEFDK NPTWHCIVGRNFGSY+T E KHFIYFYL Q
Sbjct: 21 SVECAIQALEKYNIEKDIAAHLKKEFDKKNNPTWHCIVGRNFGSYMTREIKHFIYFYLDQ 80
Query: 188 VAILLFKSG 214
VAILLFKSG
Sbjct: 81 VAILLFKSG 89
>sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic
Length = 85
Score = 120 bits (301), Expect = 1e-27
Identities = 53/71 (74%), Positives = 63/71 (88%)
Frame = +2
Query: 2 EAAVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYL 181
+ A++ A AMEK+ IEKDIAAFIK+EFDK ++PTWHCIVGRNFGS+VTHE++HFIYFYL
Sbjct: 15 QEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRHFIYFYL 74
Query: 182 GQVAILLFKSG 214
G VA LLFKSG
Sbjct: 75 GTVAFLLFKSG 85
>sp|Q94748|DYL2_SCHMA Probable dynein light chain (T-cell-stimulating antigen SM10)
Length = 89
Score = 116 bits (291), Expect = 1e-26
Identities = 51/71 (71%), Positives = 61/71 (85%)
Frame = +2
Query: 2 EAAVNCATTAMEKYNIEKDIAAFIKKEFDKMYNPTWHCIVGRNFGSYVTHETKHFIYFYL 181
E AV+ A A++KY IEKD+AA+IKKEFD+ YNP WHCIVG++FGSYVTHET+HFIYFYL
Sbjct: 19 ETAVHTAAAALDKYEIEKDVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQHFIYFYL 78
Query: 182 GQVAILLFKSG 214
+ A LLFKSG
Sbjct: 79 QERAFLLFKSG 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,604,412
Number of Sequences: 369166
Number of extensions: 529995
Number of successful extensions: 1258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)