Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D14
(426 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 33 0.33
sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein ... 32 0.73
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kina... 31 0.96
sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kina... 30 1.6
sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor comp... 30 2.1
sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (U... 28 6.2
sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 (Upst... 28 6.2
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 32.7 bits (73), Expect = 0.33
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +1
Query: 10 DEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGTEEH 189
+E ++ LSDL DI DSE K + + + + SE+ EE
Sbjct: 254 EEKVEERDLLSDLQDISDSERKTSSAESSSAES----------------GSGSEEEEEEE 297
Query: 190 VKEKDCNGSSAKVTENGDSAENE 258
+E++ GS+++ +E + E E
Sbjct: 298 EEEEEEEGSTSEESEEEEEEEEE 320
>sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein RAD52
Length = 505
Score = 31.6 bits (70), Expect = 0.73
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 1 VDNDEPETKKQRLSDLNDIKDSEEKAQNG 87
+DND P K+Q+L++ N I D+ + NG
Sbjct: 184 IDNDNPAVKRQKLNNQNSIPDTNKVKYNG 212
>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 2)
(CDK11)
Length = 780
Score = 31.2 bits (69), Expect = 0.96
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Frame = +1
Query: 10 DEPETKKQRLSDLNDIKDSEEK--------AQNGDDAEEDQXXXXXXXXXXXXXXXXXXX 165
+E ++ LSDL DI DSE K A++G +EE++
Sbjct: 255 EEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEE-------EEEEEEEEEGST 307
Query: 166 SEKGTEEHVKEKDCNGSSAKVTENGDSAENEVNA*CHIECQLSVQLNDRDVKHLVFVISS 345
SE+ EE +E++ GS+++ E + + EV+ E ++S + HL+ V S
Sbjct: 308 SEESEEEEEEEEEETGSNSE--EASEQSAEEVS-----EEEMSEDEERENENHLLVVPES 360
>sp|P21127|CD2L1_HUMAN PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
(CLK-1) (CDK11) (p58 CLK-1)
Length = 795
Score = 30.4 bits (67), Expect = 1.6
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Frame = +1
Query: 10 DEPETKKQRLSDLNDIKDSEEK--------AQNGDDAEEDQXXXXXXXXXXXXXXXXXXX 165
+E ++ LSDL DI DSE K A++G +EE++
Sbjct: 267 EEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEE----EEEEEEEEEGSTSEE 322
Query: 166 SEKGTEEHVKEKDCNGSSAKVTENGDSAENEVNA*CHIECQLSVQLNDRDVKHLVFVISS 345
SE+ EE +E++ GS+++ E + + EV+ E ++S + HL+ V S
Sbjct: 323 SEEEEEEEEEEEEETGSNSE--EASEQSAEEVS-----EEEMSEDEERENENHLLVVPES 375
>sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor complex subunit 1
Length = 585
Score = 30.0 bits (66), Expect = 2.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 1 VDNDEPETKKQRLSDLNDIKDSEEKAQNGDDA 96
VD DEP++KKQRL + D + GDD+
Sbjct: 364 VDKDEPQSKKQRLMEKIHYVDLGDPILEGDDS 395
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (Upstream binding factor 1-B)
(UBF-1-B) (xUBF-2)
Length = 701
Score = 28.5 bits (62), Expect = 6.2
Identities = 16/87 (18%), Positives = 39/87 (44%)
Frame = +1
Query: 4 DNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXSEKGTE 183
D D+ + + + D +D +D E+ +++GD ++ E E
Sbjct: 617 DEDDEDDEDEEDDDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENEDEEDEEDDDEDNEE 676
Query: 184 EHVKEKDCNGSSAKVTENGDSAENEVN 264
+ + + +GSS+ + + DS++++ N
Sbjct: 677 D--DDDNESGSSSSSSSSADSSDSDSN 701
>sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 (Upstream binding factor 1)
(UBF-1) (Autoantigen NOR-90)
Length = 764
Score = 28.5 bits (62), Expect = 6.2
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Frame = +1
Query: 4 DNDEPETKKQRLSDLNDIKDS-----EEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXS 168
D DE E + D DS E+++++GD+ EED
Sbjct: 689 DEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDE----------------D 732
Query: 169 EKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 264
+ ++ ++ + GSS+ + +GDS++++ N
Sbjct: 733 DDEDDDEDEDNESEGSSSSSSSSGDSSDSDSN 764
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,495,986
Number of Sequences: 369166
Number of extensions: 466957
Number of successful extensions: 1544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)