Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D11
(888 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17845|CYSI_SALTY Sulfite reductase [NADPH] hemoprotein ... 30 9.0
sp|P34404|YLW1_CAEEL Hypothetical protein F22B7.1 in chromo... 30 9.0
sp|P17846|CYSI_ECOLI Sulfite reductase [NADPH] hemoprotein ... 30 9.0
>sp|P17845|CYSI_SALTY Sulfite reductase [NADPH] hemoprotein beta-component (SIR-HP)
(SIRHP)
Length = 570
Score = 30.0 bits (66), Expect = 9.0
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 270 MGYTAVMTWKDCGMNFVFKLTHPTEDTKVFATETEEEAYFWIEQINQYAIGVTPSELKVL 449
+G A+ T D N V ++P E ++ EAY W ++I+++ + T + ++
Sbjct: 140 VGLDALATANDMNRN-VLCTSNPYE------SQLHAEAYEWAKKISEHLLPRTRAYAEIW 192
Query: 450 LDQSSILNTD 479
LDQ + TD
Sbjct: 193 LDQEKVATTD 202
>sp|P34404|YLW1_CAEEL Hypothetical protein F22B7.1 in chromosome III
Length = 348
Score = 30.0 bits (66), Expect = 9.0
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 315 FVFKLTHPTEDTKVFATETEEEAYFWIEQINQYAIGVTPSELKVL--LDQSSILNTDPLD 488
F+F L PTED + +++ Y ++ + + + +E VL +++S + + D L+
Sbjct: 78 FIFVLDLPTEDRETLKAYVKDKTYEKLKYVIDSKVKMNRNEKNVLGRINESLVQSIDNLE 137
Query: 489 EFD 497
FD
Sbjct: 138 HFD 140
>sp|P17846|CYSI_ECOLI Sulfite reductase [NADPH] hemoprotein beta-component (SIR-HP)
(SIRHP)
Length = 570
Score = 30.0 bits (66), Expect = 9.0
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 270 MGYTAVMTWKDCGMNFVFKLTHPTEDTKVFATETEEEAYFWIEQINQYAIGVTPSELKVL 449
+G A+ T D N V ++P E ++ EAY W ++I+++ + T + ++
Sbjct: 140 VGLDALATANDMNRN-VLCTSNPYE------SQLHAEAYEWAKKISEHLLPRTRAYAEIW 192
Query: 450 LDQSSILNTD 479
LDQ + TD
Sbjct: 193 LDQEKVATTD 202
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,700,054
Number of Sequences: 369166
Number of extensions: 1565469
Number of successful extensions: 3413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3412
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)