Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D10
(766 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 (GTPa... 30 5.5
sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 (GTPase... 30 5.5
sp|P09851|RASA1_BOVIN Ras GTPase-activating protein 1 (GTPa... 30 5.5
>sp|P20936|RASA1_HUMAN Ras GTPase-activating protein 1 (GTPase-activating protein) (GAP)
(Ras p21 protein activator) (p120GAP) (RasGAP)
Length = 1047
Score = 30.4 bits (67), Expect = 5.5
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 54 QLERNFQSDNDKVYFLSISSYF----FMASIIIAPFAGYSVDCLKNRVEHNSDPKVFLK- 218
+LE+N + + + L+I S FMAS I+ P Y CL+ V+H ++
Sbjct: 834 KLEKNEDVNTNLTHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRT 893
Query: 219 NILSSFGLPLIVC 257
++S F ++C
Sbjct: 894 RVVSGFVFLRLIC 906
>sp|P50904|RASA1_RAT Ras GTPase-activating protein 1 (GTPase-activating protein) (GAP)
(Ras p21 protein activator) (p120GAP) (RasGAP)
Length = 1038
Score = 30.4 bits (67), Expect = 5.5
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 54 QLERNFQSDNDKVYFLSISSYF----FMASIIIAPFAGYSVDCLKNRVEHNSDPKVFLK- 218
+LE+N + + + LSI S FMAS I+ P Y CL+ V+H ++
Sbjct: 825 KLEKNEDVNTNLAHLLSILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNNTMRT 884
Query: 219 NILSSFGLPLIVC 257
++S F ++C
Sbjct: 885 RVVSGFVFLRLIC 897
>sp|P09851|RASA1_BOVIN Ras GTPase-activating protein 1 (GTPase-activating protein) (GAP)
(Ras p21 protein activator) (p120GAP) (RasGAP)
Length = 1044
Score = 30.4 bits (67), Expect = 5.5
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +3
Query: 54 QLERNFQSDNDKVYFLSISSYF----FMASIIIAPFAGYSVDCLKNRVEHNSDPKVFLK- 218
+LE+N + + + L+I S FMAS I+ P Y CL+ V+H ++
Sbjct: 831 KLEKNEDVNTNLAHLLNILSELVEKIFMASEILPPTLRYIYGCLQKSVQHKWPTNTTMRT 890
Query: 219 NILSSFGLPLIVC 257
++S F ++C
Sbjct: 891 RVVSGFVFLRLIC 903
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,107,180
Number of Sequences: 369166
Number of extensions: 980914
Number of successful extensions: 2262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7066925600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)