Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D06
(911 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8AYC2|MRTFA_XENLA Myocardin-related transcription facto... 39 0.020
sp|P65289|LIP_STAAN Lipase precursor (Glycerol ester hydrol... 37 0.059
sp|P68875|S230_PLAFO Transmission-blocking target antigen S... 36 0.17
sp|Q9NJB5|ONEC_DROME Homeobox protein onecut 35 0.29
sp|P38904|SPP41_YEAST SPP41 protein 35 0.38
sp|P21458|FTSK_BACSU DNA translocase ftsK (DNA translocase ... 34 0.65
sp|Q9ZEC7|Y016_RICPR Hypothetical protein RP016 precursor 34 0.65
sp|Q04893|YM96_YEAST Hypothetical 113.1 kDa protein in pre5... 33 0.85
sp|P57645|Y585_BUCAI Hypothetical protein BU585 (yba4) 33 0.85
sp|Q09897|YAIA_SCHPO Hypothetical protein C24B11.10c in chr... 33 1.1
>sp|Q8AYC2|MRTFA_XENLA Myocardin-related transcription factor A (MRTF-A) (xMRTF-A)
Length = 936
Score = 38.9 bits (89), Expect = 0.020
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 10/166 (6%)
Frame = +1
Query: 202 IDFKVNDEPQIDVQSTQHTDGSNTDTIKIESKLPISKQRSIPSPKIQRPSRVSEKGFPSP 381
+ F + Q +QST T SN T I LP ++S P P ++ R+ + P P
Sbjct: 196 VQFGTDAFNQDSLQSTAITI-SNGLTASICKSLPALVKQSQPKPSFEKSQRIKKPKEPKP 254
Query: 382 KEERKEFVSGIPVNIAQ--SPSDKENYQK--------NKNNIDDSNMDNNLTPNTIIERP 531
K ++ ++ IP + Q +P+ +Y K + I + + TI+ P
Sbjct: 255 KVKKLKYHQYIPPDQKQKGTPAMDSSYAKLLQQQQLFLQLQIINQQQHQHYNYQTILPAP 314
Query: 532 SSNFSRFESQEYKVDSKTTFTSVSTVGDSIVKKSTQTEISSMKSTG 669
+ Q S TT S+STV S + T T +S + G
Sbjct: 315 PKPLP--DQQNTNSSSTTTVRSMSTVAPSTLATPTITRQNSNVAVG 358
Score = 30.0 bits (66), Expect = 9.4
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Frame = +1
Query: 79 PPILSENIQAAEVQIQDSVTPAEMESECIQEQVKDNVLSERIDFK--VNDEPQIDVQSTQ 252
P + ++ I+ ++ D + + E V N+L K + D +V
Sbjct: 87 PSLQAKQIKLKRARLADDLNEKISQRPGPMELVVKNILPVETSLKEVIIDVDYPEVVDNS 146
Query: 253 HTDGSNTDTIKIESKLPISKQRSIPSPKIQRPSRVSEKGFPSP 381
D ++D + E Q SIPSP RPS ++ SP
Sbjct: 147 SFDEDSSDALSPEQPASQESQGSIPSPIENRPSETTQIPALSP 189
>sp|P65289|LIP_STAAN Lipase precursor (Glycerol ester hydrolase)
sp|P65288|LIP_STAAM Lipase precursor (Glycerol ester hydrolase)
Length = 681
Score = 37.4 bits (85), Expect = 0.059
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 15/168 (8%)
Frame = +1
Query: 103 QAAEVQI------QDSVTPAEMESECIQEQ--------VKDNVLSERIDFKVNDEPQIDV 240
QAAE Q+ +D+VT + + +E V + +E + ++++ I
Sbjct: 34 QAAEKQVNMGNSQEDTVTAQSIGDQQTRENANYQRENGVDEQQHTENLTKNLHNDKTISE 93
Query: 241 QSTQHTDGSNTDTIKIESKLPISKQRSIPSPKIQRPSRVSEKGFPSPKEERKEFVSGIPV 420
++ + TD N D +K + K S+ + IQR + + PS + E
Sbjct: 94 ENHRKTDDLNKDQLKDD------KNSSLNNKNIQRDTTKNNNANPSDVNQGLEQAIN--- 144
Query: 421 NIAQSPSDKENYQKNKNNIDDSNMDNNLTPNTII-ERPSSNFSRFESQ 561
+ QS + K +N DSN +NNL ++ E PS N S SQ
Sbjct: 145 DGKQSKVASQQQSKEVDNSQDSNANNNLPSQSLTKEAPSLNKSDQTSQ 192
>sp|P68875|S230_PLAFO Transmission-blocking target antigen S230 precursor
sp|P68874|S230_PLAF7 Transmission-blocking target antigen S230 precursor
Length = 3135
Score = 35.8 bits (81), Expect = 0.17
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 13/72 (18%)
Frame = +1
Query: 388 ERKEFVSGIPVNI-------------AQSPSDKENYQKNKNNIDDSNMDNNLTPNTIIER 528
++KE + G PVNI + P+ K+NY+ K NI +++ + L ++IE+
Sbjct: 1712 KKKEELGGNPVNIHCYALLKPLDTLYVKCPTSKDNYEAAKVNISENDNEYELQVISLIEK 1771
Query: 529 PSSNFSRFESQE 564
NF ES++
Sbjct: 1772 RFHNFETLESKK 1783
>sp|Q9NJB5|ONEC_DROME Homeobox protein onecut
Length = 1081
Score = 35.0 bits (79), Expect = 0.29
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Frame = +1
Query: 373 PSPKEERKEFVSGIPVNIAQSPSDKENYQKNKNN------IDDSNMDNNLTPNTII---- 522
P+P R + VSGI N SP +E Y +K+ D + N TP ++
Sbjct: 653 PTPPPLRDDSVSGIKQNERSSPGHREQYFLDKSQEPSSVVADQCSPGINGTPQSVCVIHQ 712
Query: 523 ERPSSNFSRFE--SQEYKVDS----KTTFTSVSTVGDSIVKKSTQTEISS 654
+ PS+ + F+ SQ+ KV S K T +S V + I S EI++
Sbjct: 713 QSPSALGNGFQSSSQQAKVSSCASPKGTVSSGGAVSNRIANSSDMEEINT 762
>sp|P38904|SPP41_YEAST SPP41 protein
Length = 1435
Score = 34.7 bits (78), Expect = 0.38
Identities = 30/158 (18%), Positives = 64/158 (40%), Gaps = 9/158 (5%)
Frame = +1
Query: 139 PAEMESECIQEQVKDNVLSERIDFKVNDEPQ-IDVQSTQHTDGSNTDTIK----IESKLP 303
P E+ + +N++ E + ++ Q +D+Q HTD +N + ++ +E+ L
Sbjct: 258 PTNNENTLDLSNILENLIHENDNAAIDTAKQTVDIQDNSHTDNTNNEDVEAQALVEATLK 317
Query: 304 ISKQRSIPSPKIQRPSRVSEKGFPSPKE----ERKEFVSGIPVNIAQSPSDKENYQKNKN 471
+ + S + PS+ G S ++ RK IP+ + Q+ K+ + K
Sbjct: 318 AFENELLSSAPTEEPSQEQSIGPVSSRKAVEPPRKPTADDIPLAMLQAFKPKKRPPQEKK 377
Query: 472 NIDDSNMDNNLTPNTIIERPSSNFSRFESQEYKVDSKT 585
T N S++ + + + K +K+
Sbjct: 378 KTKSKTSKAASTANKSPASESTSKKKKKKKTVKESNKS 415
>sp|P21458|FTSK_BACSU DNA translocase ftsK (DNA translocase SpoIIIE)
Length = 787
Score = 33.9 bits (76), Expect = 0.65
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 12/143 (8%)
Frame = +1
Query: 274 DTIKIESKLPISKQRSIPSPKIQRPSRVSEKGFPSPKEERKEFVSGIPV----NIAQSPS 441
D +S + SK+ PS K Q+P+R ++ P P +E ++ + P+ I S S
Sbjct: 206 DMKSFKSNMQSSKKTKAPSKK-QKPARKKQQMEPEPPDEEGDYETVSPLIHSEPIISSFS 264
Query: 442 DKENYQKN----KNNIDDSNMDNNLTPNT----IIERPSSNFSRFESQEYKVDSKTTFTS 597
D+ +++ K S ++ P T + P F+ E+++Y++ S
Sbjct: 265 DRNEEEESPVIEKRAEPVSKPLQDIQPETGDQETVSAPPMTFTELENKDYEMPSLDLLAD 324
Query: 598 VSTVGDSIVKKSTQTEISSMKST 666
G KK+ ++ T
Sbjct: 325 PKHTGQQADKKNIYENARKLERT 347
>sp|Q9ZEC7|Y016_RICPR Hypothetical protein RP016 precursor
Length = 302
Score = 33.9 bits (76), Expect = 0.65
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Frame = +1
Query: 340 QRPSRVSEKGFPSPKEERKEFVSGIP------VNIAQSPSDKENYQKNKNNIDDSNMDNN 501
Q + +S G PS K + E ++ + V Q+P K + K NN+D +
Sbjct: 70 QEKNNLSNNG-PSNKSDMAEELANVTTKSLYKVRKMQAPEFKISENKFLNNLDSQTISKE 128
Query: 502 LTPNTIIERPSSNFSRFESQEYKVDSKTTFTSVSTVGDSIVKKSTQTEISSMKS 663
L PNT + SQ+ ++ + T+VST +S V ST + + + S
Sbjct: 129 LDPNTYT-------TESISQKPEIILTASSTTVSTDSNSFVTVSTASSLKPVTS 175
>sp|Q04893|YM96_YEAST Hypothetical 113.1 kDa protein in pre5-FET4 intergenic region
Length = 1140
Score = 33.5 bits (75), Expect = 0.85
Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 5/213 (2%)
Frame = +1
Query: 43 LPAENIVIPMYVPPILSENIQAAEVQIQD---SVTPAEMESEC--IQEQVKDNVLSERID 207
LP + ++ + P+ SE A + S T + + SE V +
Sbjct: 246 LPFSSTILSITSSPVSSEAPSATSSSVSSEASSSTSSSVSSEAPLATSSVVSSEAPSSTS 305
Query: 208 FKVNDEPQIDVQSTQHTDGSNTDTIKIESKLPISKQRSIPSPKIQRPSRVSEKGFPSPKE 387
V+ E S+ ++ S+T + + S+ P++ + S + PS S
Sbjct: 306 SVVSSEAPSSTSSSVSSEISSTTSSSVSSEAPLATSSVVSS---EAPSSTSSSVSSEISS 362
Query: 388 ERKEFVSGIPVNIAQSPSDKENYQKNKNNIDDSNMDNNLTPNTIIERPSSNFSRFESQEY 567
VS S E +++ S ++ + + E PSS S S+
Sbjct: 363 TTSSSVSSEAPLATSSVVSSEAPSSTSSSVS-SEAPSSTSSSVSSEAPSSTSSSVSSEIS 421
Query: 568 KVDSKTTFTSVSTVGDSIVKKSTQTEISSMKST 666
S + VS+ S+V + ISS+ S+
Sbjct: 422 STKSSVMSSEVSSATSSLVSSEAPSAISSLASS 454
>sp|P57645|Y585_BUCAI Hypothetical protein BU585 (yba4)
Length = 112
Score = 33.5 bits (75), Expect = 0.85
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 424 IAQSPSDKENYQKNKNNIDDSNMDNNLTPNTIIERPS 534
I Q+ +K N +KN NNI D N DN + NT+I++ S
Sbjct: 77 IEQNILEKYNLEKNNNNITD-NSDNEIIQNTLIKKNS 112
>sp|Q09897|YAIA_SCHPO Hypothetical protein C24B11.10c in chromosome I
Length = 932
Score = 33.1 bits (74), Expect = 1.1
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Frame = +1
Query: 265 SNTDTIKIES---KLP-----ISKQRSIPSPK------IQRPSRVSEKGFPSPKEERKEF 402
SNTD+ +ES LP + ++ +P+ +Q+P R P +
Sbjct: 315 SNTDSFGLESDERSLPSVSNDLKSSETLKNPRNDDLLTLQQPPRY-------PHSQMVML 367
Query: 403 VSGIPVNIAQSPSDKENYQKNKNNIDDSNMDNNLTPNTIIERPS 534
+ PV + D+ N +N NN DNN T T+ PS
Sbjct: 368 PARSPVEVPAPTFDRRNVSRNSNNNSPEGYDNNRTNPTVNNLPS 411
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.129 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,905,525
Number of Sequences: 369166
Number of extensions: 1793632
Number of successful extensions: 4717
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4493
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)