Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D03
(723 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91924|ARF_DUGJA ADP-ribosylation factor 369 e-102
sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1) >gi|... 333 4e-91
sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1 >gi|51316981... 333 4e-91
sp|P51643|ARF1_XENLA ADP-ribosylation factor 1 333 4e-91
sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regener... 332 6e-91
sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1 332 6e-91
sp|P84082|ARF2_RAT ADP-ribosylation factor 2 >gi|51316991|s... 328 7e-90
sp|P34728|ARF_CRYNE ADP-ribosylation factor 325 1e-88
sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1 325 1e-88
sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1 324 2e-88
>sp|P91924|ARF_DUGJA ADP-ribosylation factor
Length = 183
Score = 369 bits (946), Expect = e-102
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 542
LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS
Sbjct: 122 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 181
Query: 543 KK 548
KK
Sbjct: 182 KK 183
>sp|P61210|ARF1_LOCMI ADP-ribosylation factor 1 (lARF1)
sp|P61209|ARF1_DROME ADP-ribosylation factor 1
Length = 182
Score = 333 bits (853), Expect = 4e-91
Identities = 163/181 (90%), Positives = 170/181 (93%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
GN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ EAREELMRML EDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 542
L+FANKQDLPNAMN AEITDKLGLHSLRNR+WYIQATCATSGDGLYEGLDWLS LKN +
Sbjct: 122 LIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKNAN 181
Query: 543 K 545
+
Sbjct: 182 R 182
>sp|Q4R5P2|ARF1_MACFA ADP-ribosylation factor 1
sp|P84079|ARF1_RAT ADP-ribosylation factor 1
sp|P84078|ARF1_MOUSE ADP-ribosylation factor 1
sp|P84077|ARF1_HUMAN ADP-ribosylation factor 1
sp|P84080|ARF1_BOVIN ADP-ribosylation factor 1
Length = 181
Score = 333 bits (853), Expect = 4e-91
Identities = 164/179 (91%), Positives = 170/179 (94%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
GN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 539
LVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P51643|ARF1_XENLA ADP-ribosylation factor 1
Length = 181
Score = 333 bits (853), Expect = 4e-91
Identities = 164/179 (91%), Positives = 170/179 (94%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
GN+ +L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 539
LVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWLS L+N+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
>sp|P61206|ARF3_RAT ADP-ribosylation factor 3 (Liver regeneration-related protein
LRRG202)
sp|P61205|ARF3_MOUSE ADP-ribosylation factor 3
sp|P61207|ARF3_FUGRU ADP-ribosylation factor 3
sp|Q5R5P7|ARF3_PONPY ADP-ribosylation factor 3
sp|P61204|ARF3_HUMAN ADP-ribosylation factor 3
Length = 181
Score = 332 bits (851), Expect = 6e-91
Identities = 164/179 (91%), Positives = 170/179 (94%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
GN+ +LL L GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML EDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 539
LVFANKQDLPNAMN AEITDKLGLHSLR+R+WYIQATCATSGDGLYEGLDWL+ LKN+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>sp|Q10943|ARF1_CAEEL ADP-ribosylation factor 1
Length = 181
Score = 332 bits (851), Expect = 6e-91
Identities = 165/180 (91%), Positives = 168/180 (93%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
GN+ L LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERV EAREELMRML EDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 542
LVFANKQDLP AMN AE+TDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLS LKNRS
Sbjct: 122 LVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
>sp|P84082|ARF2_RAT ADP-ribosylation factor 2
sp|Q8BSL7|ARF2_MOUSE ADP-ribosylation factor 2
sp|P84081|ARF2_BOVIN ADP-ribosylation factor 2
Length = 181
Score = 328 bits (842), Expect = 7e-90
Identities = 163/179 (91%), Positives = 166/179 (92%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
GN+ L LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREEL RML EDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 539
LVF NKQDLPNAMN AEITDKLGLHSLR R+WYIQATCATSGDGLYEGLDWLS LKN+
Sbjct: 122 LVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>sp|P34728|ARF_CRYNE ADP-ribosylation factor
Length = 182
Score = 325 bits (832), Expect = 1e-88
Identities = 160/180 (88%), Positives = 168/180 (93%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
G V+ LL+ LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GLSVSKLLNGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRER+ EAREEL RML+EDELRDA+L
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERITEAREELQRMLSEDELRDALL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 542
LVFANKQDLPNAMN AEITDKLGLHSLR RSWYIQA CATSGDGLYEGL+WLS LK +S
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRSWYIQAACATSGDGLYEGLEWLSANLKRKS 181
>sp|P51824|ARF1_SOLTU ADP-ribosylation factor 1
Length = 197
Score = 325 bits (832), Expect = 1e-88
Identities = 160/184 (86%), Positives = 168/184 (91%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
G ++ L RLF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI
Sbjct: 2 GLTISKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVNEAREELMRML EDELRDAVL
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVNEAREELMRMLAEDELRDAVL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNRS 542
LVFANKQDLPNAMN AEITDKLGLHSLR R WYIQ+TCATSG+GLYEGLDWLS ++N+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNQIRNQK 181
Query: 543 KK*N 554
N
Sbjct: 182 ANCN 185
>sp|P36579|ARF1_SCHPO ADP-ribosylation factor 1
Length = 180
Score = 324 bits (830), Expect = 2e-88
Identities = 157/179 (87%), Positives = 168/179 (93%)
Frame = +3
Query: 3 GNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI 182
G ++ L LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NI
Sbjct: 2 GLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61
Query: 183 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVL 362
SFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRER++EA EEL RMLNEDELRDA+L
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALL 121
Query: 363 LVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKNR 539
LVFANKQDLPNAMN AEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLST LKN+
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKNQ 180
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,732,145
Number of Sequences: 369166
Number of extensions: 1404077
Number of successful extensions: 4794
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4717
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)