Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_D02
(744 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type 6 (Prote... 273 4e-73
sp|P60900|PSA6_HUMAN Proteasome subunit alpha type 6 (Prote... 272 8e-73
sp|Q9XZJ4|PSA6_DROME Proteasome subunit alpha type 6 (20S p... 260 2e-69
sp|O81146|PSA6A_ARATH Proteasome subunit alpha type 6-A (Pr... 237 2e-62
sp|O81147|PSA6B_ARATH Proteasome subunit alpha type 6-B (Pr... 236 4e-62
sp|O48551|PSA6_SOYBN Proteasome subunit alpha type 6 (20S p... 231 1e-60
sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type 6 (20S p... 229 8e-60
sp|Q9LSU3|PSA6_ORYSA Proteasome subunit alpha type 6 (20S p... 225 1e-58
sp|O17586|PSA6_CAEEL Proteasome subunit alpha type 6 (Prote... 222 9e-58
sp|O94517|PSA6_SCHPO Probable proteasome subunit alpha type 6 218 1e-56
>sp|Q9QUM9|PSA6_MOUSE Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain)
Length = 246
Score = 273 bits (698), Expect = 4e-73
Identities = 132/237 (55%), Positives = 177/237 (74%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRL+QVEYAFKAI+ GL SV +RG +C V+ TQ+K+PDK+++ ++ T LF
Sbjct: 11 RHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
KITES GCVMTGM D RSQV RA+ EAA GYE+ D +C+ IADI+QVYTQ+AE
Sbjct: 71 KITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLGC MI + D E P +YK DP+G+ G +A A G KQ E+ S+LEKK++K ++
Sbjct: 131 MRPLGCCMILIGID-EEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDW 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
T ++ VE AI CLS V S+DFK E+E+G+VT + P FR+L++ +ID +L A+AE+D
Sbjct: 190 TFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
>sp|P60900|PSA6_HUMAN Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain) (27 kDa prosomal protein) (PROS-27) (p27K)
sp|P60901|PSA6_RAT Proteasome subunit alpha type 6 (Proteasome iota chain) (Macropain
iota chain) (Multicatalytic endopeptidase complex iota
chain)
Length = 246
Score = 272 bits (695), Expect = 8e-73
Identities = 131/237 (55%), Positives = 177/237 (74%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRL+QVEYAFKAI+ GL SV +RG +C V+ TQ+K+PDK+++ ++ T LF
Sbjct: 11 RHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
KITE+ GCVMTGM D RSQV RA+ EAA GYE+ D +C+ IADI+QVYTQ+AE
Sbjct: 71 KITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAE 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLGC MI + D E P +YK DP+G+ G +A A G KQ E+ S+LEKK++K ++
Sbjct: 131 MRPLGCCMILIGID-EEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDW 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
T ++ VE AI CLS V S+DFK E+E+G+VT + P FR+L++ +ID +L A+AE+D
Sbjct: 190 TFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD 246
>sp|Q9XZJ4|PSA6_DROME Proteasome subunit alpha type 6 (20S proteasome subunit alpha-1)
Length = 244
Score = 260 bits (665), Expect = 2e-69
Identities = 129/237 (54%), Positives = 177/237 (74%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRL+QVEYAFKAI+ + + +V ++ +C VVATQ+K+ +K I + T LF
Sbjct: 11 RHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
+IT+ GC MTG I D RSQV +A+ EAA GYEM D +CR IADINQVYTQ+AE
Sbjct: 71 RITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAE 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLGCSM+ ++YD E P +YKTDP+G+ +G +A +VGAK LEA SYLEKK + N
Sbjct: 131 MRPLGCSMVLIAYDNEIG-PSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPN--L 187
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
+ ++A+++AI+CLS V ++DFK +EIG+V++ P FR+L + +I+E+LT IAEKD
Sbjct: 188 SEEKAIQLAISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKIAEKD 244
>sp|O81146|PSA6A_ARATH Proteasome subunit alpha type 6-A (Proteasome subunit alpha type 1)
(20S proteasome alpha subunit A-1) (Proteasome component
1)
Length = 246
Score = 237 bits (605), Expect = 2e-62
Identities = 120/237 (50%), Positives = 165/237 (69%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRLFQVEYAFKA+ G+ S+G+RG + V TQ+K+PDK+++++S T LF
Sbjct: 11 RHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
IT+ G V TG+ D RS V +A+ +AA GYEM D + + IAD +QVYTQ A
Sbjct: 71 PITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAY 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLG + + D E N PLLYK DP+G GH+A + G K+ EA ++LEKK+++N F
Sbjct: 131 MRPLGVVAMVMGVD-EENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSF 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
T DE V+ AI+ L V DFKA E+E+G+V + P FR L+ E+I+E+LTAI+E+D
Sbjct: 190 TFDETVQTAISALQSVLQEDFKATEIEVGVVRAENPEFRALTTEEIEEHLTAISERD 246
>sp|O81147|PSA6B_ARATH Proteasome subunit alpha type 6-B (Proteasome subunit alpha type 1)
(20S proteasome alpha subunit A-2)
Length = 246
Score = 236 bits (603), Expect = 4e-62
Identities = 121/237 (51%), Positives = 163/237 (68%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRLFQVEYAFKA+ G+ S+G+RG + V TQ+K+PDK+++++S + LF
Sbjct: 11 RHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
+T+ G + TGM D RS V +A+ EAA GYEM D + + IAD +QVYTQ A
Sbjct: 71 PVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAY 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLG + L D E PLLYK DP+G GH+A + G K+ EA ++LEKK+++N F
Sbjct: 131 MRPLGVVAMVLGID-EERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAF 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
T DE V+ AI+ L V DFKA E+E+G+V D P FR L E+IDE+LTAI+E+D
Sbjct: 190 TYDETVQTAISALQSVLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHLTAISERD 246
>sp|O48551|PSA6_SOYBN Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1) (Proteasome iota
subunit)
Length = 246
Score = 231 bits (590), Expect = 1e-60
Identities = 118/237 (49%), Positives = 161/237 (67%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRLFQVEYAFKA+ G+ S+G+RG + V T +K+PDK+++ S T LF
Sbjct: 11 RHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
IT+ G + TGM D R+ V +A+ EAA GYEM D + + IAD +QVYTQ A
Sbjct: 71 PITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKWIADKSQVYTQHAY 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLG + L D E+ P LYK DP+G GH+A + G K EA ++LEKK++ + F
Sbjct: 131 MRPLGVVAMVLGIDDEYG-PQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKKMKNDPSF 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
T +E V+ AI+ L V DFKA E+E+G+V +D P FRVL+ ++IDE+LTAI+E+D
Sbjct: 190 TYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPEFRVLTTDEIDEHLTAISERD 246
>sp|Q9XG77|PSA6_TOBAC Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1)
Length = 246
Score = 229 bits (583), Expect = 8e-60
Identities = 116/237 (48%), Positives = 164/237 (69%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRLFQVEYAFKA+ G+ S+G+RG + V TQ+K+PDK++++ S + LF
Sbjct: 11 RHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
IT+ G + TGM D R+ V +A+ EAA GYEM D + + IAD +QVYTQ A
Sbjct: 71 PITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAY 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLG + L D E P L+K DP+G GH+A + G+K+ EA ++LEKK++ + F
Sbjct: 131 MRPLGVVAMILGID-EEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAF 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
+ +E V+ AI+ L V DFKA E+E+G+V ++ P FRVL+ E+IDE+LTAI+E+D
Sbjct: 190 SYEETVQTAISALQSVLQEDFKASEIEVGVVKKEDPIFRVLTTEEIDEHLTAISERD 246
>sp|Q9LSU3|PSA6_ORYSA Proteasome subunit alpha type 6 (20S proteasome alpha subunit A)
(20S proteasome subunit alpha-1)
Length = 246
Score = 225 bits (573), Expect = 1e-58
Identities = 115/237 (48%), Positives = 162/237 (68%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGRL+QVEYAFKA+ G+ S+G+RG + V TQ+K+PDK+++ S T LF
Sbjct: 11 RHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLF 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
IT+ G + TG+ D RS V +A+ EAA GYEM D + + IAD QVYTQ A
Sbjct: 71 PITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAY 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MRPLG + L YD E N L+K DP+G GH+A + G K+ EA ++LEKK++ + +F
Sbjct: 131 MRPLGVVAMVLGYDEEKNAQ-LFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQF 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
+ +E V++AI+ L V DFKA E+E+G+V +D FR L+ E+ID++LTAI+E+D
Sbjct: 190 SYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHLTAISERD 246
>sp|O17586|PSA6_CAEEL Proteasome subunit alpha type 6 (Proteasome subunit alpha 1)
Length = 246
Score = 222 bits (565), Expect = 9e-58
Identities = 105/237 (44%), Positives = 164/237 (69%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R++TIFSPEGR++QVEYAFKAI+ L +V ++G + V+A Q+++PD +I ++ T ++
Sbjct: 11 RHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVY 70
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
+I++S GC GMIPD + Q+ RAQ EAA GY+M C+ + + +AD+NQ YTQ+AE
Sbjct: 71 QISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAE 130
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNKEF 542
MR LGC+++ +SYD E P +Y+ DP+G+ G + V+VG KQL A S+LEKK++K E
Sbjct: 131 MRSLGCALLFISYDDE-KGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSEL 189
Query: 543 TLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
T EA+E+AI L +D ++ +LE+ +VT+D F L+ ++++ +L IA +D
Sbjct: 190 TSTEAIELAIEALQTSLGIDVRSKDLEVVVVTKDNSKFTKLTSDQVEHHLNQIANRD 246
>sp|O94517|PSA6_SCHPO Probable proteasome subunit alpha type 6
Length = 244
Score = 218 bits (555), Expect = 1e-56
Identities = 117/238 (49%), Positives = 159/238 (66%), Gaps = 1/238 (0%)
Frame = +3
Query: 3 RYMTIFSPEGRLFQVEYAFKAISLDGLLSVGIRGNNCGVVATQRKIPDKMIERNSATRLF 182
R +T+FSPEGRL+QVEYAFKA + G+ SVG+ G NC V +Q+K+PDK+I+ ++ +F
Sbjct: 9 RTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVF 68
Query: 183 KITESTGCVMTGMIPDCRSQVSRAQMEAAXXXXXXGYEMSCDNICRCIADINQVYTQSAE 362
IT+ GCVMTG I D R+QVSRA+ EAA GY M CD + + +A+I QV TQ A
Sbjct: 69 PITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAA 128
Query: 363 MRPLGCSMIALSYDIEFNKPLLYKTDPSGFVAGHRAVAVGAKQLEAKSYLEKKLRKNK-E 539
MRPLG +M ++ D E P L+K DP+GF G++A + G KQ E ++LEK+ +K+
Sbjct: 129 MRPLGVAMTLVAVDDEIG-PSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIP 187
Query: 540 FTLDEAVEVAINCLSHVQSVDFKAGELEIGIVTQDCPYFRVLSDEKIDEYLTAIAEKD 713
L + VE I L S DFK+ EL+IG+V D P FRVLS E+I+ +L +IAEKD
Sbjct: 188 SNLTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKP-FRVLSVEEIEAHLQSIAEKD 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,833,856
Number of Sequences: 369166
Number of extensions: 1627465
Number of successful extensions: 4272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4020
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6728100400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)