Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_C24
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5SV85|SYNG_MOUSE AP1 gamma subunit-binding protein 1 (G... 44 2e-04
sp|Q9UMZ2|SYNG_HUMAN AP1 gamma subunit-binding protein 1 (G... 44 2e-04
sp|O43567|RNF13_HUMAN RING finger protein 13 31 1.0
sp|Q90972|RNF13_CHICK RING finger protein 13 (C-RZF) 31 1.0
sp|O54965|RNF13_MOUSE RING finger protein 13 30 1.3
sp|Q07468|VPS39_YEAST Vacuolar assembly protein VPS39 (Vacu... 29 3.0
sp|Q73NT9|SYM_TREDE Methionyl-tRNA synthetase (Methionine--... 29 3.9
sp|P03447|HEMA_IASH5 Hemagglutinin precursor [Contains: Hem... 29 3.9
sp|P09345|HEMA_IACKS Hemagglutinin precursor [Contains: Hem... 28 8.6
sp|O95980|RECK_HUMAN Reversion-inducing cysteine-rich prote... 28 8.6
>sp|Q5SV85|SYNG_MOUSE AP1 gamma subunit-binding protein 1 (Gamma-synergin)
Length = 1306
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Frame = +3
Query: 6 RDIFTDIEKYWNNFM------ILLPDELQIYVQTKLSKRAESSDCPSFSDDTTSNDI-CG 164
+ + DI+K WNN + L PDE + + S C + ++ CG
Sbjct: 1191 QQLLKDIDKVWNNLIGFMSLATLTPDENSL----------DFSSCMLRPGIKNAQELACG 1240
Query: 165 VCLCLLD-------------PGDGF--------LSHGLRRYHCPCANLWVNTLDLTLPGL 281
VCL +D P F L++G +YH CAN W+N ++ PGL
Sbjct: 1241 VCLLNVDSRSRKEETPAEEQPKKAFNSETDSFKLAYGGHQYHASCANFWINCVEPKPPGL 1300
Query: 282 SVPE 293
+P+
Sbjct: 1301 LLPD 1304
>sp|Q9UMZ2|SYNG_HUMAN AP1 gamma subunit-binding protein 1 (Gamma-synergin)
Length = 1314
Score = 43.5 bits (101), Expect = 2e-04
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 28/124 (22%)
Frame = +3
Query: 6 RDIFTDIEKYWNNFM------ILLPDELQIYVQTKLSKRAESSDCPSFSDDTTSNDI-CG 164
+ + DI+K WNN + L PDE + + S C + ++ CG
Sbjct: 1199 QQLLKDIDKVWNNLIGFMSLATLTPDENSL----------DFSSCMLRPGIKNAQELACG 1248
Query: 165 VCLCLLD-------------PGDGF--------LSHGLRRYHCPCANLWVNTLDLTLPGL 281
VCL +D P F L++G +YH CAN W+N ++ PGL
Sbjct: 1249 VCLLNVDSRSRKEEKPAEEHPKKAFNSETDSFKLAYGGHQYHASCANFWINCVEPKPPGL 1308
Query: 282 SVPE 293
+P+
Sbjct: 1309 VLPD 1312
>sp|O43567|RNF13_HUMAN RING finger protein 13
Length = 381
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +3
Query: 153 DICGVCLCLLDPGDGF----LSHGLRRYHCPCANLWVNTLDLTLP 275
D+C +CL + GD SH YHC C + W+ T P
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHA---YHCKCVDPWLTKTKKTCP 279
>sp|Q90972|RNF13_CHICK RING finger protein 13 (C-RZF)
Length = 381
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +3
Query: 153 DICGVCLCLLDPGDGF----LSHGLRRYHCPCANLWVNTLDLTLP 275
D+C +CL + GD SH YHC C + W+ T P
Sbjct: 238 DVCAICLDEYEDGDKLRILPCSHA---YHCKCVDPWLTKTKKTCP 279
>sp|O54965|RNF13_MOUSE RING finger protein 13
Length = 381
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +3
Query: 153 DICGVCLCLLDPGDGF----LSHGLRRYHCPCANLWVNTLDLTLP 275
D+C +CL + GD SH YHC C + W+ T P
Sbjct: 238 DVCAICLEEYEDGDKLRILPCSHA---YHCKCVDPWLTKTKKTCP 279
>sp|Q07468|VPS39_YEAST Vacuolar assembly protein VPS39 (Vacuolar morphogenesis protein
VAM6)
Length = 1049
Score = 29.3 bits (64), Expect = 3.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 204 TKTHLRDLINKDRPRKYHLMWCHLKSWDNQSFQLF 100
T+ HL++L++K+ + + WC+ QSF F
Sbjct: 552 TRRHLQNLLSKENDDESRITWCYRDREIKQSFDFF 586
>sp|Q73NT9|SYM_TREDE Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS)
Length = 793
Score = 28.9 bits (63), Expect = 3.9
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +3
Query: 3 TRDIFTDIEKYWNNFMILLPDELQIYVQTK---LSKRAESSDCPSFSDDTTSNDICGVCL 173
T+ IF D++K N I Q+Y + L+ R CPS S D D C C
Sbjct: 103 TQGIFNDLDK---NGYITEHTIEQLYCPSCKRFLADRYVLGTCPSCSYDGARGDQCEHCG 159
Query: 174 CLLDPGD 194
LLDP D
Sbjct: 160 KLLDPTD 166
>sp|P03447|HEMA_IASH5 Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain]
Length = 109
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = -3
Query: 300 ILILVQIIQVTSDQVCLPI---NLRKDNDTDVNR-VTKTHLRDLINK 172
+L+L I V SDQ+C+ N + DT + + VT TH +D++ K
Sbjct: 5 VLLLAMISLVKSDQICIGYHANNSTEQVDTIMEKNVTVTHAQDILEK 51
>sp|P09345|HEMA_IACKS Hemagglutinin precursor [Contains: Hemagglutinin HA1 chain;
Hemagglutinin HA2 chain]
Length = 564
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = -3
Query: 300 ILILVQIIQVTSDQVCLPINLRKDN---DTDVNR-VTKTHLRDLINK 172
+L+L + V SDQ+C+ + K DT + + VT TH +D++ +
Sbjct: 5 VLLLAIVSLVKSDQICIGYHANKSTKQVDTIMEKNVTVTHAQDILER 51
>sp|O95980|RECK_HUMAN Reversion-inducing cysteine-rich protein with Kazal motifs
precursor (hRECK) (Suppressor of tumorigenicity 15)
(ST15)
Length = 971
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -2
Query: 247 HKFAQGQ*YRRKPCDKNPSPGSNKQRQTPQISFDVVSSEKLGQSELSALLDNFVC 83
H+F G + PC NP+P QR P+ + + +K G S+ + C
Sbjct: 664 HQFEFGSCMSKDPC--NPNPCQKNQRCIPKPQVCLTTFDKFGCSQYECVPRQLAC 716
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,250,571
Number of Sequences: 369166
Number of extensions: 929588
Number of successful extensions: 2386
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2384
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)