Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_C21
(539 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16262|COX1_BACP3 Cytochrome c oxidase polypeptide I (Cy... 30 2.9
sp|Q8FXT9|LNT_BRUSU Apolipoprotein N-acyltransferase (ALP N... 30 3.7
sp|Q8YEA6|LNT_BRUME Apolipoprotein N-acyltransferase (ALP N... 30 3.7
sp|O05949|DPO1_RICPR DNA polymerase I (POL I) 30 4.9
sp|P56911|NUON2_RHIME NADH-quinone oxidoreductase chain N 2... 30 4.9
sp|P39755|NDHF_BACSU Probable NADH-quinone oxidoreductase s... 29 8.3
>sp|P16262|COX1_BACP3 Cytochrome c oxidase polypeptide I (Cytochrome aa3 subunit 1)
Length = 616
Score = 30.4 bits (67), Expect = 2.9
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +3
Query: 165 HVPFYIVWVICGGLCSARVVTIFWARTPGHSERIISAITIVVLHMGFLLYLHFAYHLIVS 344
H YI+ + G+ S T R G+S + + T+++ +GF+++ H + + +
Sbjct: 249 HPEVYILVLPAFGIFSEIFATFSRKRLFGYSSMVFA--TVLIAFLGFMVWAHHMFTVGMG 306
Query: 345 EVANAI 362
+ANAI
Sbjct: 307 PIANAI 312
>sp|Q8FXT9|LNT_BRUSU Apolipoprotein N-acyltransferase (ALP N-acyltransferase)
Length = 532
Score = 30.0 bits (66), Expect = 3.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 231 FWARTPGHSERIISAITIVVLHMGFLLYLHFAYH 332
FW R PG + ++ +T++ +G +LY +H
Sbjct: 499 FWGRPPGWIQTVLILLTLLAASVGLILYSRRRFH 532
>sp|Q8YEA6|LNT_BRUME Apolipoprotein N-acyltransferase (ALP N-acyltransferase)
Length = 532
Score = 30.0 bits (66), Expect = 3.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 231 FWARTPGHSERIISAITIVVLHMGFLLYLHFAYH 332
FW R PG + ++ +T++ +G +LY +H
Sbjct: 499 FWGRPPGWIQTVLILLTLLAASVGLILYSRRRFH 532
>sp|O05949|DPO1_RICPR DNA polymerase I (POL I)
Length = 867
Score = 29.6 bits (65), Expect = 4.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 343 QKWQTLSRTCNSLNSFISNFFVRNC 417
Q++ T ++ C S N +++NFF R C
Sbjct: 740 QEYMTQTKACASRNGYVTNFFGRKC 764
>sp|P56911|NUON2_RHIME NADH-quinone oxidoreductase chain N 2 (NADH dehydrogenase I, chain
N 2) (NDH-1, chain N 2)
Length = 479
Score = 29.6 bits (65), Expect = 4.9
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Frame = +3
Query: 108 LTGHCIVVLLGSLIHFGNSHVPFYIVWVICGGLCSARVVTIFWA--RTPGHSERIISAIT 281
+TG C+++++G L+ G + ++W + A V T+ A P ++ IS
Sbjct: 20 VTGACVLLIVGELVRKGRDDL---LLWASVAIVLLAAVATLMLAGEMRPAYAGMFISDRF 76
Query: 282 IVVLHMGFLLYLHFAYHLIVSEVANAIKNM*QSQFFYI*FLCEELSMNYSL*FHLSSMLC 461
V + F YL +S I+ + +S+++ + L F L M+
Sbjct: 77 AVFFKLVF--YLATILTFFLSRKYAEIEGIGRSEYYVL------------LLFALVGMMI 122
Query: 462 EASVSDCVVIIVGI 503
AS D + I VG+
Sbjct: 123 MASAIDLLSIYVGL 136
>sp|P39755|NDHF_BACSU Probable NADH-quinone oxidoreductase subunit 5 (NADH dehydrogenase
subunit 5)
Length = 505
Score = 28.9 bits (63), Expect = 8.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 183 VWVICGGLCSARVVTIFWARTPGHSERIISAITI 284
+WV+ G + S + FW PG +ISA+ +
Sbjct: 355 LWVMAGRILSLVIGVAFWLTAPGDGYHLISALIL 388
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,565,153
Number of Sequences: 369166
Number of extensions: 1279544
Number of successful extensions: 2889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2889
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)