Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_C12
(639 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 110 2e-24
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 103 4e-22
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 97 3e-20
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 94 4e-19
sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx) 89 9e-18
sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin) 89 9e-18
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 89 1e-17
sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 pre... 88 2e-17
sp|Q8JI39|CRVP_TRIFL Triflin precursor 88 2e-17
sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precurs... 88 2e-17
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 110 bits (276), Expect = 2e-24
Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 5/115 (4%)
Frame = +2
Query: 44 FMFVGQNMFAGS----NYKEVVQGWYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCA 211
F +G+N++ GS + + WYDE +DY ++ + C VCGHYTQV WA SY VGCA
Sbjct: 93 FTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCA 152
Query: 212 AVNCKEKTG-GSFAYGWLFICNYGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 373
C + +G + + G FICNYGP GN+ PY+ GA CS CP C +NLC
Sbjct: 153 VQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRGATCSACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 103 bits (257), Expect = 4e-22
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 4/114 (3%)
Frame = +2
Query: 44 FMFVGQNMFAGS----NYKEVVQGWYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCA 211
F +G+N++ GS + + WY+E K Y + + C VCGHYTQV WA SY +GCA
Sbjct: 91 FTALGENIWLGSLSIFSVSSAISAWYEEIKHYDFSTRKCRHVCGHYTQVVWADSYKLGCA 150
Query: 212 AVNCKEKTGGSFAYGWLFICNYGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 373
C G FIC+YGPAGN+ PY+ GA CS CPK C N+LC
Sbjct: 151 VQLCPN--------GANFICDYGPAGNY-PTWPYKQGATCSDCPKDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 97.4 bits (241), Expect = 3e-20
Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 8/132 (6%)
Frame = +2
Query: 2 IAGHDTYDDRQLDKFMFVGQNMFAGS---NYKEVVQGWYDEYKDYTYEGKGC---SAVCG 163
I H +Y+ R ++ G+N++ + +++ W+DEYKD+ Y G G +AV G
Sbjct: 69 IESHSSYESRVIEGIK-CGENIYMSPYPMKWTDIIHAWHDEYKDFKY-GVGADPPNAVTG 126
Query: 164 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 337
HYTQ+ W KSY +GCAA C S Y + F+C Y PAGNF PY G C
Sbjct: 127 HYTQIVWYKSYRIGCAAAYCP-----SSPYSYFFVCQYCPAGNFIGKTATPYTSGTPCGD 181
Query: 338 CPKGTSCKNNLC 373
CP + C N LC
Sbjct: 182 CP--SDCDNGLC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 93.6 bits (231), Expect = 4e-19
Identities = 47/114 (41%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Frame = +2
Query: 56 GQNMFAGSN---YKEVVQGWYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAV 217
G+N+F S+ + ++Q WYDEY+++ Y G G + +V GHYTQ+ W KSY VGCAA
Sbjct: 92 GENIFMASDPWAWTSIIQDWYDEYRNFVY-GVGANPPDSVTGHYTQIVWYKSYLVGCAAA 150
Query: 218 NCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 373
C S Y + ++C Y PAGN + PY G C+ CP ++C N LC
Sbjct: 151 YCP-----SSLYNYFYVCQYCPAGNIQGSTSTPYASGPTCADCP--SNCDNGLC 197
>sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx)
Length = 238
Score = 89.0 bits (219), Expect = 9e-18
Identities = 46/113 (40%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Frame = +2
Query: 56 GQNMFAGSN---YKEVVQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVN 220
G+N+F S + VVQ WYDE K++ Y K +V GHYTQV W KSY +GCA+
Sbjct: 93 GENIFMSSQPFPWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAK 152
Query: 221 CKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 373
C +L++C Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 153 CSSSK-------YLYVCQYCPAGNIRGSIATPYKSGPPCADCP--SACVNKLC 196
>sp|Q7ZT98|CRVP_OPHHA Ophanin precursor (Opharin)
Length = 239
Score = 89.0 bits (219), Expect = 9e-18
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 8/114 (7%)
Frame = +2
Query: 56 GQNMFAGSN---YKEVVQGWYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAV 217
G+N++ SN + E++Q W+DEYK++ Y G G + +V GHYTQ+ W K+Y +GCA
Sbjct: 92 GENIYMSSNPRAWTEIIQLWHDEYKNFVY-GVGANPPGSVTGHYTQIVWYKTYRIGCAVN 150
Query: 218 NCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 373
C S Y + ++C Y P+GN + PY+ G C CP ++C N LC
Sbjct: 151 YCP-----SSEYSYFYVCQYCPSGNMRGSTATPYKSGPTCGDCP--SACDNGLC 197
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 88.6 bits (218), Expect = 1e-17
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Frame = +2
Query: 2 IAGHDTYDDRQLDKFMFVGQNMFAGS---NYKEVVQGWYDEYKDYTYEGKGC---SAVCG 163
I H + D R ++ G+N++ + +++ W+ EYKD+ Y G G AV G
Sbjct: 76 IESHSSRDSRVIEGIK-CGENIYMSPYPMKWTDIIHAWHGEYKDFKY-GVGAVPSDAVVG 133
Query: 164 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 337
HYTQ+ W KSY +GCAA C S Y + ++C Y PAGN PY G C
Sbjct: 134 HYTQIVWYKSYRIGCAAAYCP-----SAEYSYFYVCQYCPAGNMIGKTATPYTSGPPCGD 188
Query: 338 CPKGTSCKNNLC 373
CP + C N LC
Sbjct: 189 CP--SDCDNGLC 198
>sp|O19010|CRIS3_HORSE Cysteine-rich secretory protein 3 precursor (CRISP-3)
Length = 245
Score = 88.2 bits (217), Expect = 2e-17
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 7/128 (5%)
Frame = +2
Query: 11 HDTYDDRQLDKFMFVGQNMFAGS---NYKEVVQGWYDEYKDYTYE--GKGCSAVCGHYTQ 175
H +DR + M G+N+F S ++ + +Q W+DE D+ Y K +AV GHYTQ
Sbjct: 83 HSKAEDRAVGT-MKCGENLFMSSIPNSWSDAIQNWHDEVHDFKYGVGPKTPNAVVGHYTQ 141
Query: 176 VAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKG 349
V W SY VGC C ++ G+ Y ++C Y PAGN+ ++ PYE G C++CP
Sbjct: 142 VVWYSSYRVGCGIAYCPKQ--GTLKY--YYVCQYCPAGNYVNKINTPYEQGTPCARCP-- 195
Query: 350 TSCKNNLC 373
+C N LC
Sbjct: 196 GNCDNGLC 203
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 87.8 bits (216), Expect = 2e-17
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 8/132 (6%)
Frame = +2
Query: 2 IAGHDTYDDRQLDKFMFVGQNMFAGS---NYKEVVQGWYDEYKDYTYEGKGC---SAVCG 163
I H + D R + G+N++ + + +++ W+ EYKD+ Y G G AV G
Sbjct: 76 IESHSSRDSRVIGGIK-CGENIYMATYPAKWTDIIHAWHGEYKDFKY-GVGAVPSDAVIG 133
Query: 164 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 337
HYTQ+ W KSY GCAA C S Y + ++C Y PAGN PY+ G C
Sbjct: 134 HYTQIVWYKSYRAGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGPPCGD 188
Query: 338 CPKGTSCKNNLC 373
CP + C N LC
Sbjct: 189 CP--SDCDNGLC 198
>sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precursor (CRVP)
Length = 238
Score = 87.8 bits (216), Expect = 2e-17
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Frame = +2
Query: 11 HDTYDDRQLDKFMFVGQNMFAGSN---YKEVVQGWYDEYKDYTYE--GKGCSAVCGHYTQ 175
H R + KF G+N+F S + VVQ WYDE K++ Y K +V GHYTQ
Sbjct: 79 HSPEHTRTVGKFR-CGENIFMSSQPFAWSGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQ 137
Query: 176 VAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSKCPKG 349
+ W KS+ +GCA+ C +L++C Y PAGN PY+ G +C CP
Sbjct: 138 IVWYKSHLLGCASAKCSSTK-------YLYVCQYCPAGNIRSSIATPYKSGPSCGDCP-- 188
Query: 350 TSCKNNLC 373
++C N LC
Sbjct: 189 SACVNGLC 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,950,536
Number of Sequences: 369166
Number of extensions: 1410595
Number of successful extensions: 4827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4691
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)