Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_C04
(768 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96B97|SH3K1_HUMAN SH3-domain kinase binding protein 1 (... 33 0.65
sp|Q07157|ZO1_HUMAN Tight junction protein ZO-1 (Zonula occ... 33 1.1
sp|P08297|NO75_SOYBN Early nodulin 75 precursor (N-75) (NGM... 32 1.9
sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 (Zonula occ... 32 1.9
sp|Q64028|PHC1_MOUSE Polyhomeotic-like protein 1 (Early dev... 32 2.5
sp|Q8R550|SH3K1_MOUSE SH3-domain kinase binding protein 1 (... 32 2.5
sp|Q925Q9|SH3K1_RAT SH3-domain kinase binding protein 1 (SH... 32 2.5
sp|P25558|BUD3_YEAST Bud site selection protein BUD3 31 3.2
sp|Q9PGD4|PBPA_XYLFA Penicillin-binding protein 1A (PBP-1a)... 30 5.5
sp|P16329|NO75_PEA Early nodulin 75 protein (N-75) (NGM-75) 30 7.2
>sp|Q96B97|SH3K1_HUMAN SH3-domain kinase binding protein 1 (Cbl-interacting protein of 85
kDa) (Human Src-family kinase binding protein 1) (HSB-1)
(CD2 binding protein 3) (CD2BP3)
Length = 665
Score = 33.5 bits (75), Expect = 0.65
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +3
Query: 405 PLMKVNQQSEPEIIKKPENNAHL---KQTMTAYKPKQAQPTNRIPKTVYKAKNVSRPPQT 575
P M N+ E E +PE L K ++ A PK+ +P PKT ++SRP
Sbjct: 369 PEMLPNRTEEKE---RPEREPKLDLQKPSVPAIPPKKPRP----PKT----NSLSRPG-A 416
Query: 576 LPKKEPTRPVGPACLTK 626
LP + P RPVGP T+
Sbjct: 417 LPPRRPERPVGPLTHTR 433
>sp|Q07157|ZO1_HUMAN Tight junction protein ZO-1 (Zonula occludens 1 protein) (Zona
occludens 1 protein) (Tight junction protein 1)
Length = 1748
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +3
Query: 447 KKPENNAHLKQTMTAYKPKQAQPTNRIPKTVYKAKNVSRPPQ 572
+ P+ N +L + TA+KP + T PKT+ K+ ++++PP+
Sbjct: 1544 ESPKFNHNLLPSETAHKPDLSSKTPTSPKTLVKSHSLAQPPE 1585
>sp|P08297|NO75_SOYBN Early nodulin 75 precursor (N-75) (NGM-75)
Length = 309
Score = 32.0 bits (71), Expect = 1.9
Identities = 20/76 (26%), Positives = 29/76 (38%)
Frame = +3
Query: 405 PLMKVNQQSEPEIIKKPENNAHLKQTMTAYKPKQAQPTNRIPKTVYKAKNVSRPPQTLPK 584
P K + P PE ++ Y+P Q +P + P Y+ + PP+ P
Sbjct: 184 PHEKPPEHQPPHEKPPPEYQPPHEKPPPEYQPPQEKPPHEKPPPEYQPPHEKPPPEHQPP 243
Query: 585 KEPTRPVGPACLTKKP 632
E PV P K P
Sbjct: 244 HEKPPPVYPPPYEKPP 259
>sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 (Zonula occludens 1 protein) (Zona
occludens 1 protein) (Tight junction protein 1)
Length = 1745
Score = 32.0 bits (71), Expect = 1.9
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 447 KKPENNAHLKQTMTAYKPKQAQPTNRIPKTVYKAKNVSRPPQ 572
+ P+ N +L + T +KP+ + T PKT+ KA + ++PP+
Sbjct: 1541 ESPKFNHNLLPSETVHKPELSSKTPTSPKTLMKAHSSTQPPE 1582
>sp|Q64028|PHC1_MOUSE Polyhomeotic-like protein 1 (Early development regulator protein 1)
(MPH1) (RAE-28)
Length = 1012
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Frame = +3
Query: 315 QREIVLSHMKNLNELQXXXXXXXXXXXXXXPLMKVNQQSEPEIIKKPENNAHLKQTMTAY 494
Q++I + H + Q + QQ + + ++ + T+TA
Sbjct: 396 QQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQQQQQQQQQQQQGTTLTAP 455
Query: 495 KPKQAQPTNRIP--------KTVYKAKNVSRPPQTLPKKEPTRPVGPACLTKKP 632
+P Q PT ++P +T+ + P TLP + ++P P + KP
Sbjct: 456 QPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLTLPPEPTSKP--PIPIQSKP 507
>sp|Q8R550|SH3K1_MOUSE SH3-domain kinase binding protein 1 (SH3 containing, expressed in
tumorigenic astrocytes) (Regulator of ubiquitous kinase)
(Ruk)
Length = 709
Score = 31.6 bits (70), Expect = 2.5
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 447 KKPENNAHL---KQTMTAYKPKQAQPTNRIPKTVYKAKNVSRPPQTLPKKEPTRPVGPAC 617
++PE L K ++ A PK+ +P PKT N P LP + P RPVGP
Sbjct: 424 ERPEREPKLDLQKPSVPAIPPKKPRP----PKT-----NSLNRPGALPPRRPERPVGPLT 474
Query: 618 LTK 626
T+
Sbjct: 475 HTR 477
>sp|Q925Q9|SH3K1_RAT SH3-domain kinase binding protein 1 (SH3 containing, expressed in
tumorigenic astrocytes) (Regulator of ubiquitous kinase)
(Ruk)
Length = 709
Score = 31.6 bits (70), Expect = 2.5
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 447 KKPENNAHL---KQTMTAYKPKQAQPTNRIPKTVYKAKNVSRPPQTLPKKEPTRPVGPAC 617
++PE L K ++ A PK+ +P PKT N P LP + P RPVGP
Sbjct: 424 ERPEREPKLDLQKPSVPAIPPKKPRP----PKT-----NSLNRPGVLPPRRPERPVGPLT 474
Query: 618 LTK 626
T+
Sbjct: 475 HTR 477
>sp|P25558|BUD3_YEAST Bud site selection protein BUD3
Length = 1636
Score = 31.2 bits (69), Expect = 3.2
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +3
Query: 414 KVNQQSEPEIIKKPENNAHLKQTMTAYKPKQAQPTNRIPKTVYKAKNVSRP------PQT 575
K + + EI KK + NA + + KP + + + K V+ +K+ S+P P+
Sbjct: 816 KKSSKKpreIQKKTKTNASKAEHIEKKKPNKGKGFFGVLKNVFGSKSKSKPSPVQRVPKK 875
Query: 576 LPKKEPTRPV-GPACLTKKPNNVRIVI 653
+ ++ P PV P KK + R V+
Sbjct: 876 ISQRHPKSPVKKPMTSEKKSSPKRAVV 902
>sp|Q9PGD4|PBPA_XYLFA Penicillin-binding protein 1A (PBP-1a) (PBP1a) [Includes:
Penicillin-insensitive transglycosylase (Peptidoglycan
TGase); Penicillin-sensitive transpeptidase
(DD-transpeptidase)]
Length = 809
Score = 30.4 bits (67), Expect = 5.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 549 KNVSRPPQTLPKKEPTRPVGPACLTKK 629
KN + PPQT+P +P P+ P + ++
Sbjct: 642 KNNNEPPQTIPSPDPNTPMAPRAIDER 668
>sp|P16329|NO75_PEA Early nodulin 75 protein (N-75) (NGM-75)
Length = 112
Score = 30.0 bits (66), Expect = 7.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Frame = +3
Query: 492 YKPKQAQPTNRIPKTVYKAKNVSRPP---------QTLPKKEPTRPVGP 611
Y+P +P + P VYK + PP Q P +P+RP GP
Sbjct: 58 YQPPHEKPPHENPPPVYKPPYENSPPPHVYHRPLFQAPPPVKPSRPFGP 106
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,845,852
Number of Sequences: 369166
Number of extensions: 899291
Number of successful extensions: 2701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2685
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)