Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B23
(342 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26269|ODPB_ASCSU Pyruvate dehydrogenase E1 component be... 89 3e-18
sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component be... 85 6e-17
sp|P49432|ODPB_RAT Pyruvate dehydrogenase E1 component beta... 84 8e-17
sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component be... 84 8e-17
sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component be... 81 7e-16
sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component be... 80 1e-15
sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component be... 72 4e-13
sp|Q9R9N4|ODPB_RHIME Pyruvate dehydrogenase E1 component, b... 66 2e-11
sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase E1 component be... 64 1e-10
sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component beta... 61 7e-10
>sp|P26269|ODPB_ASCSU Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 361
Score = 89.0 bits (219), Expect = 3e-18
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P CG+G+EI ARV E+ AF YLD P LRVTG D+PMPYA+PLE ALP+ +V+K VKK
Sbjct: 298 PNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVKMVKKC 357
Query: 183 LHIQ 194
L++Q
Sbjct: 358 LNVQ 361
>sp|Q9D051|ODPB_MOUSE Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 359
Score = 84.7 bits (208), Expect = 6e-17
Identities = 39/63 (61%), Positives = 53/63 (84%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P G+G+EI AR+ME AFN+LDAPA+RVTGAD+PMPYAK LE ++P+V+++I +VKK
Sbjct: 297 PQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKKT 356
Query: 183 LHI 191
L+I
Sbjct: 357 LNI 359
>sp|P49432|ODPB_RAT Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 359
Score = 84.3 bits (207), Expect = 8e-17
Identities = 38/63 (60%), Positives = 53/63 (84%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P G+G+EI AR+ME AFN+LDAPA+RVTGAD+PMPYAK LE ++P+V+++I ++KK
Sbjct: 297 PQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKT 356
Query: 183 LHI 191
L+I
Sbjct: 357 LNI 359
>sp|P11177|ODPB_HUMAN Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 359
Score = 84.3 bits (207), Expect = 8e-17
Identities = 38/63 (60%), Positives = 53/63 (84%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P G+G+EI AR+ME AFN+LDAPA+RVTGAD+PMPYAK LE ++P+V+++I ++KK
Sbjct: 297 PQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKT 356
Query: 183 LHI 191
L+I
Sbjct: 357 LNI 359
>sp|O44451|ODPB_CAEEL Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor
Length = 352
Score = 81.3 bits (199), Expect = 7e-16
Identities = 39/63 (61%), Positives = 48/63 (76%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P GIGSEI A+VME+ F+ LDAP LRVTG D+PMPY + LE ALP E+V+K+VKK
Sbjct: 289 PFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKKS 348
Query: 183 LHI 191
L+I
Sbjct: 349 LNI 351
>sp|P32473|ODPB_YEAST Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 366
Score = 80.5 bits (197), Expect = 1e-15
Identities = 37/64 (57%), Positives = 51/64 (79%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P+ G+G+EI+A+VME++AF+YLDAP RVTGAD+P PYAK LE A P ++K+VK+V
Sbjct: 303 PSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVKEV 362
Query: 183 LHIQ 194
L I+
Sbjct: 363 LSIE 366
>sp|Q09171|ODPB_SCHPO Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 366
Score = 72.0 bits (175), Expect = 4e-13
Identities = 32/61 (52%), Positives = 47/61 (77%)
Frame = +3
Query: 12 GIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKVLHI 191
GIGSEI A++ME+ AF+YLDAP RV+ AD+PMPY+ P+E ++P + V+ + KK L+I
Sbjct: 306 GIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPNADVVVAAAKKCLYI 365
Query: 192 Q 194
+
Sbjct: 366 K 366
>sp|Q9R9N4|ODPB_RHIME Pyruvate dehydrogenase E1 component, beta subunit
Length = 460
Score = 66.2 bits (160), Expect = 2e-11
Identities = 33/62 (53%), Positives = 42/62 (67%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P +G+EI RVM+ QAF+YLDAP L + G D+PMPYA LE ALP V V+ +VK V
Sbjct: 399 PQSSVGTEIATRVMQ-QAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAV 457
Query: 183 LH 188
+
Sbjct: 458 CY 459
>sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 363
Score = 63.5 bits (153), Expect = 1e-10
Identities = 29/62 (46%), Positives = 46/62 (74%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P G+ +EI A V+E ++F+YLDAP R+ GAD+PMPYA LE ALP++E+++++ K+
Sbjct: 300 PQHGVCAEICASVVE-ESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRA 358
Query: 183 LH 188
+
Sbjct: 359 CY 360
>sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B)
Length = 359
Score = 61.2 bits (147), Expect = 7e-10
Identities = 28/62 (45%), Positives = 42/62 (67%)
Frame = +3
Query: 3 PTCGIGSEILARVMETQAFNYLDAPALRVTGADIPMPYAKPLEMEALPRVENVIKSVKKV 182
P G+G+EI V+E ++F YLDA R+ GAD+PMPYA LE +P VE+++++ K+
Sbjct: 290 PQHGVGAEICTSVIE-ESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRA 348
Query: 183 LH 188
H
Sbjct: 349 CH 350
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,847,193
Number of Sequences: 369166
Number of extensions: 640023
Number of successful extensions: 1261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1259
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)