Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B15
(732 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit ... 186 7e-47
sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit ... 179 7e-45
sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit ... 179 7e-45
sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit ... 178 1e-44
sp|P48603|CAPZB_DROME F-actin capping protein beta subunit 176 6e-44
sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit 162 1e-39
sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit ... 136 5e-32
sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta... 109 7e-24
sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta... 95 2e-19
sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit 84 3e-16
>sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit (CapZ beta)
Length = 301
Score = 186 bits (471), Expect = 7e-47
Identities = 92/154 (59%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Frame = +3
Query: 3 SVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWL 179
SVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL
Sbjct: 147 SVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWL 206
Query: 180 ETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSK 359
+T S +G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K
Sbjct: 207 QTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTK 266
Query: 360 NLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNKNQ 461
++V+ LRS + + + +Q L D+ A++ K Q
Sbjct: 267 DIVNGLRSVQTFADKSKQEALKNDLVEALKRKQQ 300
>sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 179 bits (454), Expect = 7e-45
Identities = 86/128 (67%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 SVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWL 179
SVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL
Sbjct: 118 SVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWL 177
Query: 180 ETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSK 359
+T S +G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K
Sbjct: 178 QTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTK 237
Query: 360 NLVDSLRS 383
++V+ LRS
Sbjct: 238 DIVNGLRS 245
>sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 179 bits (454), Expect = 7e-45
Identities = 86/128 (67%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 SVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWL 179
SVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL
Sbjct: 118 SVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWL 177
Query: 180 ETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSK 359
+T S +G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K
Sbjct: 178 QTNKSGSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTK 237
Query: 360 NLVDSLRS 383
++V+ LRS
Sbjct: 238 DIVNGLRS 245
>sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit isoforms 1 and 2 (CapZ 36/32)
(CapZ B1 and B2) (Beta-actinin subunit II)
Length = 277
Score = 178 bits (452), Expect = 1e-44
Identities = 85/128 (66%), Positives = 102/128 (79%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 SVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWL 179
SVYLWDLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL
Sbjct: 118 SVYLWDLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWL 177
Query: 180 ETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSK 359
+T + +G NLGGSLTR EK+ +SD++ HI NIGRLVEDMEN IR LN++YFG +K
Sbjct: 178 QTNKTGSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTK 237
Query: 360 NLVDSLRS 383
++V+ LRS
Sbjct: 238 DIVNGLRS 245
>sp|P48603|CAPZB_DROME F-actin capping protein beta subunit
Length = 276
Score = 176 bits (446), Expect = 6e-44
Identities = 86/153 (56%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Frame = +3
Query: 3 SVYLWDLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWL 179
SVYLWDLD GFA +LIKKAGD K GCWDSIHV+EV+EK +GR A YKLTST MLWL
Sbjct: 118 SVYLWDLDHGFAAVILIKKAGDGSKMIRGCWDSIHVVEVQEKTTGRTAHYKLTSTAMLWL 177
Query: 180 ETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSK 359
+T +G NLGGSLTR E++ +S+++ HI NIG++VE+MEN IR LN++YFG +K
Sbjct: 178 QTNKQGSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTK 237
Query: 360 NLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNKN 458
++V+ LRS S + + QQ + QD+ AI +N
Sbjct: 238 DIVNGLRSTQSLADQRQQAAMKQDLAAAILRRN 270
>sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit
Length = 270
Score = 162 bits (409), Expect = 1e-39
Identities = 79/153 (51%), Positives = 110/153 (71%), Gaps = 2/153 (1%)
Frame = +3
Query: 3 SVYLWDLDSG-FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLW 176
SVY WDLD+G FAG VLIKK GD K+ TGCWDSIHVIE+ E+ R A YKLTSTIMLW
Sbjct: 118 SVYFWDLDNGGFAGIVLIKKEGDGAKNITGCWDSIHVIEITERA--RQAHYKLTSTIMLW 175
Query: 177 LETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTS 356
L+T S +G NLGGSLTR E + P++D N H+ N+GR++ED E+ +R +N++YFG +
Sbjct: 176 LQTNKSSSGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQESKMRLTINEIYFGKT 235
Query: 357 KNLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNK 455
K ++ LRS +S ++Q ++ +++ A+ N+
Sbjct: 236 KKVMSDLRSTEKQSELEKQDEIVRELNNAMANR 268
>sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit (CAP32)
Length = 272
Score = 136 bits (343), Expect = 5e-32
Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 4/155 (2%)
Frame = +3
Query: 3 SVYLWDLDSGFAGAVLIKKAGDIKSA----TGCWDSIHVIEVEEKGSGRNARYKLTSTIM 170
SVY WDLD FA VL+KK D G WDSIHV+EV+ G A YKLTST+M
Sbjct: 118 SVYCWDLDDNFAAVVLMKKTQDQSKKGQPMRGTWDSIHVVEVK-LGKKDKAVYKLTSTVM 176
Query: 171 LWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFG 350
L +ET N TG NL GSLTR EKE ++ + H VNIG++VEDME+ +R+ L +YFG
Sbjct: 177 LSIETDNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFG 236
Query: 351 TSKNLVDSLRSGLSKSVEDQQRKLCQDVKIAIQNK 455
+K +V++LR+ S ++++ L + AI N+
Sbjct: 237 KTKEVVNTLRNATGNSELEKRKNLSNQIGSAIGNR 271
>sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta subunit
Length = 268
Score = 109 bits (273), Expect = 7e-24
Identities = 60/132 (45%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Frame = +3
Query: 3 SVYLWDLDSGFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLE 182
SVYLWD D +AGAVLIKKA S+ WDSIHV E Y+LTSTI+L+L
Sbjct: 116 SVYLWDQDDSYAGAVLIKKASTSNSSG--WDSIHVFECLPTTETNVYDYRLTSTIILFLS 173
Query: 183 TQNSETGCF-----NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYF 347
+ + E NL G LTR T + +P +D + I N+G+LVE+ME +R L DVYF
Sbjct: 174 SGSEEQSALPSKALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEMETRMRNFLQDVYF 233
Query: 348 GTSKNLVDSLRS 383
G +K++++ RS
Sbjct: 234 GKTKDIINQTRS 245
>sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta subunit (CapZ-beta)
Length = 256
Score = 95.1 bits (235), Expect = 2e-19
Identities = 54/134 (40%), Positives = 80/134 (59%), Gaps = 8/134 (5%)
Frame = +3
Query: 3 SVYLWDLDS-GFAGAVLIKKAGDIKS-------ATGCWDSIHVIEVEEKGSGRNARYKLT 158
SVY+W+ D+ GF LIKK G G WD+IHVI+V + A+Y LT
Sbjct: 113 SVYMWEDDNEGFVACFLIKKDGSKSGHGRRGCLEEGAWDAIHVIQVGSEEE-EMAQYCLT 171
Query: 159 STIMLWLETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLND 338
STIML L T + +G F L GS+ R + E+ ++D H+ N+GR++E++E +R L+
Sbjct: 172 STIMLSLTTDDESSGKFGLSGSIRRQMKMELAVADG--HLCNMGRMIEELEGKLRNSLDQ 229
Query: 339 VYFGTSKNLVDSLR 380
VYFG ++ +V +LR
Sbjct: 230 VYFGKTREMVCTLR 243
>sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit
Length = 287
Score = 84.3 bits (207), Expect = 3e-16
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 15/157 (9%)
Frame = +3
Query: 3 SVYLWDLDS------GFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNA-RYKLTS 161
SVYLWDL+ FAG VL KK +S WDSIHV EV S ++ Y++T+
Sbjct: 124 SVYLWDLNEEDFNGHDFAGVVLFKKN---QSDHSNWDSIHVFEVTTSPSSPDSFNYRVTT 180
Query: 162 TIMLWLE-TQNSETGCFNLGGSLTRMTEKEVPLSDAN-------NHIVNIGRLVEDMENS 317
TI+L L+ T+ + L G+LTR TEK++ + + +H+ N+G L+ED+E+
Sbjct: 181 TIILHLDKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDIESQ 240
Query: 318 IRKQLNDVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQ 428
+R L VYF ++++ ++ S ++ K Q
Sbjct: 241 MRNLLETVYFEKTRDIFHQTKNAAIASSAEEANKDAQ 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,744,847
Number of Sequences: 369166
Number of extensions: 1785316
Number of successful extensions: 3991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3973
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6534486000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)