Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B14
(792 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich... 47 6e-05
sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich... 47 6e-05
sp|Q9JKL7|SFR12_RAT Splicing factor, arginine/serine-rich 1... 47 6e-05
sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/ser... 44 5e-04
sp|Q12019|MDN1_YEAST Midasin (MIDAS-containing protein) 35 0.18
sp|P38850|RT107_YEAST Regulator of Ty1 transposition protei... 34 0.52
sp|P70388|RAD50_MOUSE DNA repair protein RAD50 (mRad50) 33 0.68
sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferas... 33 0.89
sp|P94304|FTSH_BACPF Cell division protein ftsH homolog 33 0.89
sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase r... 33 1.2
>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86) (Splicing
regulatory protein 508) (SRrp508)
Length = 508
Score = 47.0 bits (110), Expect = 6e-05
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3
Query: 15 AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSNVAIVKPSNY-----LRGLEETNRRVRD 179
A+VEF++Q+++ +A G RP+ I HSN AIVKP + LEE +RVR+
Sbjct: 109 AFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVRE 168
Query: 180 SGS 188
+ S
Sbjct: 169 AQS 171
>sp|Q8BZX4|SFR12_MOUSE Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86)
Length = 494
Score = 47.0 bits (110), Expect = 6e-05
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3
Query: 15 AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSNVAIVKPSNY-----LRGLEETNRRVRD 179
A+VEF++Q+++ +A G RP+ I HSN AIVKP + LEE +RVR+
Sbjct: 112 AFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVRE 171
Query: 180 SGS 188
+ S
Sbjct: 172 AQS 174
>sp|Q9JKL7|SFR12_RAT Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86) (SR-related
protein of 86 kDa)
Length = 494
Score = 47.0 bits (110), Expect = 6e-05
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = +3
Query: 15 AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSNVAIVKPSNY-----LRGLEETNRRVRD 179
A+VEF++Q+++ +A G RP+ I HSN AIVKP + LEE +RVR+
Sbjct: 112 AFVEFADQNSVPRALAFNGVMFGDRPLKINHSNNAIVKPPEMTPQAAAKELEEVMKRVRE 171
Query: 180 SGS 188
+ S
Sbjct: 172 AQS 174
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 (p54)
Length = 452
Score = 43.9 bits (102), Expect = 5e-04
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +3
Query: 15 AYVEFSEQSAIVKAFGMMGTNLNTRPIMIQHSNVAIVKP 131
AYVEFS+Q+++ A G RP+ IQHS VAI+KP
Sbjct: 207 AYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKP 245
>sp|Q12019|MDN1_YEAST Midasin (MIDAS-containing protein)
Length = 4910
Score = 35.4 bits (80), Expect = 0.18
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Frame = +1
Query: 238 RGNVRDLAKEVDLTKQANLVANQNPVLDDVPNRDLANDRFLDLVEVEVDQ--RTKN*GRG 411
+ N +D+ ++ DLT+ A N+N D RD N+ D VE+E D ++ G
Sbjct: 4071 QNNNKDVEQDEDLTEDAQ---NENKEQQDKDERDDENED--DAVEMEGDMAGELEDLSNG 4125
Query: 412 QELDQRIVKDEVEAEKNEENDLDLIGNQKEDQDQSVEMNRGMESAKITETNQSMKAKRK 588
+E D D E E +EE D DL + D + ++ +++K +T+Q++ K +
Sbjct: 4126 EENDDEDT-DSEEEELDEEID-DLNEDDPNAIDDKMWDDKASDNSKEKDTDQNLDGKNQ 4182
>sp|P38850|RT107_YEAST Regulator of Ty1 transposition protein 107
Length = 1070
Score = 33.9 bits (76), Expect = 0.52
Identities = 16/71 (22%), Positives = 39/71 (54%)
Frame = +1
Query: 436 KDEVEAEKNEENDLDLIGNQKEDQDQSVEMNRGMESAKITETNQSMKAKRKTN*RIKNVK 615
K E+ + ++ND+D +KE+++ +++ G + + +T++ + +++TN V
Sbjct: 626 KQEIREQSRKKNDIDY---KKEEEETELQVQLGQRTKREIKTSKKNEKEKETNECHIEVD 682
Query: 616 QRNTERSGRKS 648
Q E+ G +S
Sbjct: 683 QMTNEKQGEES 693
>sp|P70388|RAD50_MOUSE DNA repair protein RAD50 (mRad50)
Length = 1312
Score = 33.5 bits (75), Expect = 0.68
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 14/102 (13%)
Frame = +1
Query: 367 VEVEVDQRTKN*GRGQELDQRIVKDEVEAEKNEEN--------DLDLIGNQKEDQDQSV- 519
V E+ Q + R ELDQ + K E E K E+N ++ + N+K D D+S+
Sbjct: 460 VRSELQQLEGSSDRILELDQELTKAERELSKAEKNSSIETLKAEVMSLQNEKADLDRSLR 519
Query: 520 EMNRGMESAK---ITETNQSMKAKRKT--N*RIKNVKQRNTE 630
++++ ME T T M K KT + +I+ +K R+++
Sbjct: 520 KLDQEMEQLNHHTTTRTQMEMLTKDKTDKDEQIRKIKSRHSD 561
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 (2'-O-ribose RNA
methyltransferase) (S-adenosyl-L-methionine-dependent
methyltransferase)
Length = 845
Score = 33.1 bits (74), Expect = 0.89
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Frame = +1
Query: 334 RDLANDRFLDLVEVEV-----------DQRTKN*GRGQELDQRIVKDEVEAEKNEENDLD 480
R L ND D VE ++ +Q +K R +E+ + DE EAE+ ++D +
Sbjct: 553 RALFNDSIFDGVEADLPSEEPQAPASSEQGSKK-RRLEEVSEESSSDEEEAEEESDSDFE 611
Query: 481 LIGNQKEDQDQSVE 522
++ N+K++ D +
Sbjct: 612 IVRNEKDESDDDYD 625
>sp|P94304|FTSH_BACPF Cell division protein ftsH homolog
Length = 679
Score = 33.1 bits (74), Expect = 0.89
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Frame = +1
Query: 223 KEFQNRGNVRD-LAKEVDLTKQANL----VANQNPVLDDVPNRDLANDRFLDLVEVEVDQ 387
++ QN N D +A E+DL Q + + +L++ + DL LD+ ++ +Q
Sbjct: 542 RDIQNEQNYSDAIAHEIDLEVQRIIKECYARCKQILLENKDSLDLVAKTLLDMETLDAEQ 601
Query: 388 RTKN*GRGQELDQRIVKDEVEAEKNEENDLDLIGNQKEDQDQSVEMNRGME 540
G+ D + E EK E+D+ + N K+++ VE + E
Sbjct: 602 IKSLVHEGKLPDDHHLNAHPEKEKASESDVKVNINSKKEETPQVEAEQPQE 652
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator
Length = 1003
Score = 32.7 bits (73), Expect = 1.2
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Frame = +1
Query: 262 KEVDLTKQANLVA---------NQNPVLDDVPNRDLANDRFLDLVEVEVDQRTKN*GRGQ 414
KE +L + A L A N N DD+PNRD V +E D+ +K+ +
Sbjct: 650 KENELAEMAGLQARRQSEENLRNINMFFDDLPNRD---------VNIE-DEESKDFVKDS 699
Query: 415 ELDQRIVKDEVEAEKNEENDLDLIGNQKE--------DQDQSVEMNRG-MESAKITETNQ 567
+++ V + E E EE D L G + +Q +SVE + G E ET+Q
Sbjct: 700 RRNKQDVIFDSERESIEEPDSYLEGESESQQGTTDGFEQPESVEFSSGEKEDDDEVETDQ 759
Query: 568 SMKAKRK 588
++ RK
Sbjct: 760 NLWYSRK 766
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,616,187
Number of Sequences: 369166
Number of extensions: 1171300
Number of successful extensions: 4516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4496
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)