Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B13
(671 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O32617|FTSH_HELFE Cell division protein ftsH homolog 32 1.1
sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle 32 2.0
sp|Q8BWJ3|KPB2_MOUSE Phosphorylase b kinase alpha regulator... 32 2.0
sp|Q8WT54|FAR1_WUCBA Fatty-acid and retinol-binding protein... 32 2.0
sp|Q962W7|FAR1_LOALO Fatty-acid and retinol-binding protein... 32 2.0
sp|P18106|FPS_DROME Tyrosine-protein kinase Fps85D (dFer) 31 2.6
sp|P41993|YKC2_CAEEL Hypothetical protein B0280.2 in chromo... 31 3.3
sp|Q8A455|SYE_BACTN Glutamyl-tRNA synthetase (Glutamate--tR... 31 3.3
sp|Q8BKE9|IFT74_MOUSE Intraflagellar transport 74 homolog (... 31 3.3
sp|P12753|RAD50_YEAST DNA repair protein RAD50 (153 kDa pro... 30 4.4
>sp|O32617|FTSH_HELFE Cell division protein ftsH homolog
Length = 638
Score = 32.3 bits (72), Expect = 1.1
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = +2
Query: 143 ISEEKRNR---SDFESKSDWQERIALE----VKNFLRPAYMSKKITKSDYKEIMKRCVTK 301
+ E++RN F S ++ E++A E +KN L Y+ K T SDYK+ ++ V +
Sbjct: 542 VLEKQRNSFLGGGFGSGREFSEKMAEEMDSFIKNLLEERYVHVKQTLSDYKDAIEVMVNE 601
Query: 302 ISRSGVTEINTEKIEKFVLSY 364
+ V I E++ + + Y
Sbjct: 602 LFEKEV--ITGERVREIISEY 620
>sp|P08799|MYS2_DICDI Myosin II heavy chain, non muscle
Length = 2116
Score = 31.6 bits (70), Expect = 2.0
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +2
Query: 86 SNTAQTNQS-SKQLSSTSNEISEEKRNRSDFESKSDWQERIALEVKNFLRPAYMSKKI-- 256
SN ++ ++ QL + +NE+ EEK+NR E K + + E+K+ L KK
Sbjct: 1083 SNVEKSKKTLESQLVAVNNELDEEKKNRDALEKKKKALDAMLEEMKDQLESTGGEKKSLY 1142
Query: 257 -TKSDYKEIMKRCVTKISRSGVTEINTEKIEKFVLSYVDKYQ 379
K + M+ +IS T EKI+ + V + Q
Sbjct: 1143 DLKVKQESDMEALRNQISELQSTIAKLEKIKSTLEGEVARLQ 1184
>sp|Q8BWJ3|KPB2_MOUSE Phosphorylase b kinase alpha regulatory chain, liver isoform
(Phosphorylase kinase alpha L subunit)
Length = 1235
Score = 31.6 bits (70), Expect = 2.0
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +2
Query: 113 SKQLSSTSNEISEEKRNRSDFESKSDWQERIA---LEVKNFLRPAYMSKKITKSDYKEIM 283
++ L+ + E SE N S F+ KS ++ V+ +RP + S E+
Sbjct: 929 ARSLNCSGKEASESLMNLSPFDMKSLLHHILSGKEFGVERSVRPIHSSMSSPAISIHEVG 988
Query: 284 KRCVTKISRSGVTEINTE 337
TK RSG+T + +E
Sbjct: 989 HTGATKTERSGITRLRSE 1006
>sp|Q8WT54|FAR1_WUCBA Fatty-acid and retinol-binding protein 1 precursor (Wb-FAR-1)
Length = 178
Score = 31.6 bits (70), Expect = 2.0
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +2
Query: 92 TAQTNQSSKQLSSTSNEISEEKRNRSDFESKSDWQERIALEVKNFLRPAYMS-KKITKSD 268
T + + ++L+S + E ++KSD + A+E++NF++ S K K+
Sbjct: 46 TVEDKEILRELASKHATFANEDAALEALKAKSDNLYKNAVELRNFVKAKIDSLKPDAKTF 105
Query: 269 YKEIMKRCVTKISRSGVTEINTEKIEKFVLSYVDKYQ 379
EI+ + + S G +++TEKI++ + KYQ
Sbjct: 106 VDEIIAKARSLRSDDG-HKLDTEKIKQAARDIIAKYQ 141
>sp|Q962W7|FAR1_LOALO Fatty-acid and retinol-binding protein 1 precursor (Ll-FAR-1)
(Ll20)
Length = 178
Score = 31.6 bits (70), Expect = 2.0
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +2
Query: 92 TAQTNQSSKQLSSTSNEISEEKRNRSDFESKSDWQERIALEVKNFLRPAYMS-KKITKSD 268
TA+ + + L+S + E + KSD + A+E++NF++ S K K+
Sbjct: 46 TAEDKEILRDLASKHATFANEDAALEALKDKSDKLYKNAVELRNFVKAKIDSLKPDAKAF 105
Query: 269 YKEIMKRCVTKISRSGVTEINTEKIEKFVLSYVDKYQ 379
E++ R + S G + +T+KI++ + KYQ
Sbjct: 106 VDEVIARARSLRSDDG-QKFDTDKIKQAARDIIAKYQ 141
>sp|P18106|FPS_DROME Tyrosine-protein kinase Fps85D (dFer)
Length = 1325
Score = 31.2 bits (69), Expect = 2.6
Identities = 22/62 (35%), Positives = 27/62 (43%)
Frame = +2
Query: 176 ESKSDWQERIALEVKNFLRPAYMSKKITKSDYKEIMKRCVTKISRSGVTEINTEKIEKFV 355
E + QE L +N L+ A +T YKEI KR T I TE E EK+
Sbjct: 214 EHQQSVQESFILLWRNILQEAAQYGDLTADKYKEIQKRIDTVIGSINPTEEYGEFTEKYK 273
Query: 356 LS 361
S
Sbjct: 274 TS 275
>sp|P41993|YKC2_CAEEL Hypothetical protein B0280.2 in chromosome III
Length = 627
Score = 30.8 bits (68), Expect = 3.3
Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Frame = +2
Query: 32 LASSAAAIMANVSM--PLPMSNTAQTNQSSKQLSSTSNEISEEKRNRSDFESKSDWQERI 205
L+ S+ ++ +++M P P+ T++ +S L + +EI+ SKS+ Q +
Sbjct: 502 LSDSSTSVAQDIAMKVPTPLPRTSKIISASSPLPPSQDEINPLIEMVDQSSSKSETQIPV 561
Query: 206 ALEVKNFLRPAYMSKKITKSDYKEIMKRCVT------KISRSGVTEINTEKIEKFVLSYV 367
++ L + +I +D+ +++ + ++ K +S E+ IEK + +Y+
Sbjct: 562 TECSQSHLNGKGSAAQIQSADFDKVLNQLLSIKVNSEKSKQSADLELLLVSIEKLIQNYL 621
>sp|Q8A455|SYE_BACTN Glutamyl-tRNA synthetase (Glutamate--tRNA ligase) (GluRS)
Length = 504
Score = 30.8 bits (68), Expect = 3.3
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +2
Query: 224 FLRPAYMSKKITKSDYKEIMKRCVTKISR--SGVTEINTEKIEKFVLSYV 367
F+ PA +K K +KE +C+T+++ +G+ + + E EK V+ ++
Sbjct: 404 FVAPAEYDEKTVKKRWKEDSAKCMTELAEVIAGIEDFSIEGQEKVVMDWI 453
>sp|Q8BKE9|IFT74_MOUSE Intraflagellar transport 74 homolog (Coiled-coil domain-containing
protein 2) (Capillary morphogenesis protein 1) (CMG-1)
Length = 600
Score = 30.8 bits (68), Expect = 3.3
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +2
Query: 2 LPNYSDVLKPLASSAAAIMANVSMPLPMSNTAQTNQSSKQLSSTSNEISEEKRNRSDFES 181
L YSD L L SSA + + +T + N K + +++ KR D E+
Sbjct: 481 LETYSD-LAALKSSAEEKKKKLHQERTVLSTHR-NAFKKIMEKLTSDYDTLKRQLQDNET 538
Query: 182 KSD-------WQERIALEVKNFLRPAYMSKKITKSDYKEIMKRCVTKISRSGVT 322
+ WQ LE NF+ +++ K +SDY+ ++K + +I+ T
Sbjct: 539 HAQLTNLERKWQH---LEQNNFVMKEFIATKSQESDYQPVIKNVMKQIAEYNKT 589
>sp|P12753|RAD50_YEAST DNA repair protein RAD50 (153 kDa protein)
Length = 1312
Score = 30.4 bits (67), Expect = 4.4
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 89 NTAQTNQSSKQLSSTSNEISEEKRNRSDF--ESKSDWQERIALEVKNFLRPAYMSKKITK 262
N AQ + +QL SNE++EEKR +D E K+ Q +E+K+ L+ ++ +I++
Sbjct: 990 NKAQMLELKEQLDLKSNEVNEEKRKLADSNNEEKNLKQNLELIELKSQLQ--HIESEISR 1047
Query: 263 SD 268
D
Sbjct: 1048 LD 1049
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,305,377
Number of Sequences: 369166
Number of extensions: 1044243
Number of successful extensions: 3196
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3195
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)