Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_B11
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 105 9e-23
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 98 1e-20
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 90 4e-18
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 88 1e-17
sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx) 84 3e-16
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 83 5e-16
sp|Q8JI39|CRVP_TRIFL Triflin precursor 82 6e-16
sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor 82 1e-15
sp|Q8JI40|CRVP_AGKHA Ablomin precursor 81 2e-15
sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precurs... 81 2e-15
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 105 bits (261), Expect = 9e-23
Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Frame = +3
Query: 3 VQGWYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTG-GSFAYGWLFIC 179
+ WYDE +DY ++ + C VCGHYTQV WA SY VGCA C + +G + + G FIC
Sbjct: 114 ITNWYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFIC 173
Query: 180 NYGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 281
NYGP GN+ PY+ GA CS CP C +NLC
Sbjct: 174 NYGPGGNY-PTWPYKRGATCSACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 98.2 bits (243), Expect = 1e-20
Identities = 45/93 (48%), Positives = 54/93 (58%)
Frame = +3
Query: 3 VQGWYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICN 182
+ WY+E K Y + + C VCGHYTQV WA SY +GCA C G FIC+
Sbjct: 112 ISAWYEEIKHYDFSTRKCRHVCGHYTQVVWADSYKLGCAVQLCPN--------GANFICD 163
Query: 183 YGPAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 281
YGPAGN+ PY+ GA CS CPK C N+LC
Sbjct: 164 YGPAGNY-PTWPYKQGATCSDCPKDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 89.7 bits (221), Expect = 4e-18
Identities = 45/98 (45%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Frame = +3
Query: 3 VQGWYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLF 173
+ W+DEYKD+ Y G G +AV GHYTQ+ W KSY +GCAA C S Y + F
Sbjct: 102 IHAWHDEYKDFKY-GVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCP-----SSPYSYFF 155
Query: 174 ICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 281
+C Y PAGNF PY G C CP + C N LC
Sbjct: 156 VCQYCPAGNFIGKTATPYTSGTPCGDCP--SDCDNGLC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 87.8 bits (216), Expect = 1e-17
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Frame = +3
Query: 3 VQGWYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLF 173
+Q WYDEY+++ Y G G + +V GHYTQ+ W KSY VGCAA C S Y + +
Sbjct: 108 IQDWYDEYRNFVY-GVGANPPDSVTGHYTQIVWYKSYLVGCAAAYCP-----SSLYNYFY 161
Query: 174 ICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 281
+C Y PAGN + PY G C+ CP ++C N LC
Sbjct: 162 VCQYCPAGNIQGSTSTPYASGPTCADCP--SNCDNGLC 197
>sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx)
Length = 238
Score = 83.6 bits (205), Expect = 3e-16
Identities = 41/97 (42%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = +3
Query: 3 VQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFI 176
VQ WYDE K++ Y K +V GHYTQV W KSY +GCA+ C +L++
Sbjct: 109 VQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSSK-------YLYV 161
Query: 177 CNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 281
C Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 162 CQYCPAGNIRGSIATPYKSGPPCADCP--SACVNKLC 196
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 82.8 bits (203), Expect = 5e-16
Identities = 42/98 (42%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Frame = +3
Query: 3 VQGWYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLF 173
+ W+ EYKD+ Y G G AV GHYTQ+ W KSY +GCAA C S Y + +
Sbjct: 109 IHAWHGEYKDFKY-GVGAVPSDAVVGHYTQIVWYKSYRIGCAAAYCP-----SAEYSYFY 162
Query: 174 ICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 281
+C Y PAGN PY G C CP + C N LC
Sbjct: 163 VCQYCPAGNMIGKTATPYTSGPPCGDCP--SDCDNGLC 198
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 82.4 bits (202), Expect = 6e-16
Identities = 42/98 (42%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Frame = +3
Query: 3 VQGWYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLF 173
+ W+ EYKD+ Y G G AV GHYTQ+ W KSY GCAA C S Y + +
Sbjct: 109 IHAWHGEYKDFKY-GVGAVPSDAVIGHYTQIVWYKSYRAGCAAAYCP-----SSKYSYFY 162
Query: 174 ICNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 281
+C Y PAGN PY+ G C CP + C N LC
Sbjct: 163 VCQYCPAGNIIGKTATPYKSGPPCGDCP--SDCDNGLC 198
>sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor
Length = 238
Score = 81.6 bits (200), Expect = 1e-15
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = +3
Query: 3 VQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFI 176
VQ WYDE K++ Y K +V GHYTQV W KS+ +GCA+ C +L++
Sbjct: 109 VQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSK-------YLYV 161
Query: 177 CNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 281
C Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 162 CQYCPAGNIRGSIATPYKSGPPCADCP--SACVNRLC 196
>sp|Q8JI40|CRVP_AGKHA Ablomin precursor
Length = 240
Score = 80.9 bits (198), Expect = 2e-15
Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Frame = +3
Query: 12 WYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICN 182
W+DEYK++ Y G G +AV GH+TQ+ W KSY GCAA C S Y + ++C
Sbjct: 112 WHDEYKNFKY-GIGADPPNAVSGHFTQIVWYKSYRAGCAAAYCP-----SSEYSYFYVCQ 165
Query: 183 YGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 281
Y PAGN + PY G C CP ++C N LC
Sbjct: 166 YCPAGNMRGKTATPYTSGPPCGDCP--SACDNGLC 198
>sp|Q8UW11|CRVP2_LAPHA Cysteine-rich venom protein 2 precursor (CRVP)
Length = 238
Score = 80.9 bits (198), Expect = 2e-15
Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = +3
Query: 3 VQGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFI 176
VQ WYDE K++ Y K +V GHYTQ+ W KS+ +GCA+ C +L++
Sbjct: 109 VQAWYDEIKNFVYGIGAKPPGSVIGHYTQIVWYKSHLLGCASAKCSSTK-------YLYV 161
Query: 177 CNYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 281
C Y PAGN PY+ G +C CP ++C N LC
Sbjct: 162 CQYCPAGNIRSSIATPYKSGPSCGDCP--SACVNGLC 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,094,969
Number of Sequences: 369166
Number of extensions: 1125354
Number of successful extensions: 3350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3225
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)